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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGTCCTGAAAGGTTTTGATCAGGCAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAGgtatgatgaagttatgcaattgcagaaaaattccttcaaagattaatgagccataacttcaatgaacttagtatttatatttagctttgagacctctaaa...

Basic information

species Glycine max
transcript GLYMA15G40590.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G40590.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G65700.1 (Arabidopsis thaliana), 5'ss of exon 4
GGAGTCCTGAAAGGTTTTGATCAGGCAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAGgtatgatgaagttatgcaattgcagaaaaattccttcaaagattaatga-gcca-taacttcaatgaacttagtatttatatttagctttgagacctctaaa--
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GGAGTTCTTAAAGGTTTTGACCAGGCTACAAATATAATCCTTGATGAATCTCATGAACGTGTGTTTTCCACAAAGgttagcttctgat-tcctgttttaaagtattttcatctgaacttttcgatgttactaaattgaatgggt---gcaaatacatttttctgcaagtaaattggcca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22927651|gb|BU544790.1|BU544790
EST:     CCATGAACGAGTTTATTCTACCAAG                         GAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
genomic: CCATGAACGAGTTTATTCTACCAAGgtatgatgaa ... ttaactacagGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
EST: gi|192300038|gb|FG992191.1|FG992191
EST:     CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTTTACCAAG                         GAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
genomic: CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAGgtatgatgaa ... ttaactacagGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
EST: gi|193496721|gb|FK460305.1|FK460305
EST:     CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAG                         GAAGGTGTACAACAACATGTTCTTGGTTTATACATCATCAGGGGTGACAAC
genomic: CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAGgtatgatgaa ... ttaactacagGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
EST: gi|208303248|gb|GE101069.1|GE101069
EST:     CTTGATGAGTCCCATGAACGAGTTTATTCTACCAAG                         GAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
genomic: CTTGATGAGTCCCATGAACGAGTTTATTCTACCAAGgtatgatgaa ... ttaactacagGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
EST: gi|151399825|gb|EV269696.1|EV269696
EST:     CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAG                         GAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
genomic: CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAGgtatgatgaa ... ttaactacagGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
EST: gi|298199205|gb|HO042568.1|HO042568
EST:     CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAG                         GAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
genomic: CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAGgtatgatgaa ... ttaactacagGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
EST: gi|192300037|gb|FG992190.1|FG992190
EST:     CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAG                         GAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
genomic: CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAGgtatgatgaa ... ttaactacagGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
EST: gi|7285928|gb|AW598415.1|AW598415
EST:     CATGAACGAGTTTATTCTACCAAG                         GAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
genomic: CATGAACGAGTTTATTCTACCAAGgtatgatgaa ... ttaactacagGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
EST: gi|151395293|gb|EV265164.1|EV265164
EST:     CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAG                         GAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
genomic: CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAGgtatgatgaa ... ttaactacagGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
EST: gi|192310890|gb|FG998894.1|FG998894
EST:     CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAG                         GAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
genomic: CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAGgtatgatgaa ... ttaactacagGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
EST: gi|192310889|gb|FG998893.1|FG998893
EST:     CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAG                         GAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC
genomic: CAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAGgtatgatgaa ... ttaactacagGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAAC