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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGCAGATTTTTTTAAAGAACTTCCACAGTTTGTTGTTAAAGCTGGTCCAACTTTAAGTAATCTATATGGCACAGATTGGGAAAACAGGCTTGAGgtattgactgagcagagaaccatgactgtatttgcaaaatttatgttcttgtgtggtggtttgtttatttatttaatcattggaataattttctattaagccattctttatgttgctatttctatactag

Basic information

species Glycine max
transcript GLYMA15G36890.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G36890.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G016997_T01 (Zea mays), 5'ss of exon 4
CATTGCAGATTTTTTTAAAGAACTTCCACAGTTTGTTGTTAAAGCTGGTCCAACTTTAAGTAATCTATATGGCACAGATTGGGAAAACAGGCTTGAGgtattgactgagcagagaaccatgactgtatttgcaaaatttatgttcttgtgtgg--tggtttgtttatttatttaatcattggaataattttctattaagccattctttatgttgctatttctatactag
|||||  |||||||| || ||  | || || ||     | || | ||  |  | ||| | |   ||||||||  ||||||||||||| |||||||||||||    |  ||||  |        |    ||  |||||  || ||    |      || |||   |   ||| | || | || | |  |||| |  | ||                              
CATTGTGGATTTTTTCAAGGAGATGCCGCAATTCTGCATAAAGGTTGCACACATTTTGACTGGCCTATATGGTTCAGATTGGGAAAAGAGGCTTGAGgtat--gttatgcagttagtgtgctttcctgttctaaaatccatcttagaattgaacatgttttaacttcatatcttattaatgcacttgttttgtgctcag------------------------------

upper sequence: GLYMA15G36890.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G033828_T03 (Zea mays), 5'ss of exon 5
CATTGCAGATTTTTTTAAAGAACTTCCACAGTTTGTTGTTAAAGCTGGTCCAACTTTAAGTAATCTATATGGCACAGATTGGGAAAACAGGCTTGAGgtattgactgagcagagaaccatgactgtatttgcaaaatttatgttcttgtgtggtggtttgtttatttatttaatcattggaataattttctattaagccattctttatgttgctatttctatactag
|||||  |||||||| || ||  | ||||||||     | || | ||  |  | ||| | |   ||||||||  ||||||||||||| |||||||||||||      || |       || | |||  |  |    ||||    |   | | |    |||   || | || | |   |    ||||    |      || |  ||| || |                
CATTGTGGATTTTTTCAAGGAGATGCCACAGTTCTGCATAAAGGTTGCACACATTTTGACTGGCCTATATGGTTCAGATTGGGAAAAAAGGCTTGAGgtat------agtattatgtaattagtgtgctcccctgttttagaacccattttagaa--ttgaacatgttttaactttctatcctaatgcattt-----ccgtgttttgtgctcag-------------