1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATGTACCCGAATGGAAAGATGTCCCACCATTTTAGACAAATGAAGGAAGGTGATTACTTGGCCGTGAGGGGCCCCAAGgtactaattgccgtccttaataaggcaaagtaaaggataattaaaaaaattaatcggtccacagaaattatattgaaagtctaaattaaagtgcttagttttcaattacttgatagtctcaaaagcataatggaatgtaagtgtatatttgcgacttgtag
species | Glycine max |
transcript | GLYMA15G34620.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATTTTAGACAAATGAAGGAAGGTGATTACTTGGCCGTGAGGGGCCCCAAG GGACGTTTCAGNTACAAGCCTTGCCAGGCTAGGTCATTTEST: gi|15662175|gb|BI699546.1|BI699546
genomic: ATTTTAGACAAATGAAGGAAGGTGATTACTTGGCCGTGAGGGGCCCCAAGgtactaattg ... cgacttgtagGGACGTTTCAGTTACAAGCCTGGCCAGGCTAGGGCATTT
EST: AAATGAAGGAAGGTGATTACTTGGCCGTGAGGGGCCCCAAG GGACGTTTCAGTTACAAGCCTGGCCAGGCTAGGGCATTTGGAATGATTGCTEST: gi|151411830|gb|EV281641.1|EV281641
genomic: AAATGAAGGAAGGTGATTACTTGGCCGTGAGGGGCCCCAAGgtactaattg ... cgacttgtagGGACGTTTCAGTTACAAGCCTGGCCAGGCTAGGGCATTTGGAATGATTGCT
EST: ATTTTAGACAAATGAAGGAAGGTGATTACTTGGCCGTGAGGGGCCCCAAG GGACGTTTCAGTTACAAGCCTGGCCAGGCTAGGGCATTTGGAATGATTGCTEST: gi|4291233|gb|AI441732.1|AI441732
genomic: ATTTTAGACAAATGAAGGAAGGTGATTACTTGGCCGTGAGGGGCCCCAAGgtactaattg ... cgacttgtagGGACGTTTCAGTTACAAGCCTGGCCAGGCTAGGGCATTTGGAATGATTGCT
EST: ATTTTAGACAAATGAAGGAAGGTGATTACTTGGCCGTGAGGGGCCCCAAG GGACGTTTCAGTTACAAGCCT
genomic: ATTTTAGACAAATGAAGGAAGGTGATTACTTGGCCGTGAGGGGCCCCAAGgtactaattg ... cgacttgtagGGACGTTTCAGTTACAAGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTACCCGAATGGAAAGATGTCCCACCATTTTAGACAAATGAAGGAAGGTGATTACTTGGCCGTGAGGGGCCCCAAGgtactaattgccgtccttaataaggcaaagtaaaggataattaaaaaaattaatcggtccacagaaattatattgaaagtctaaattaaagtgcttagttttcaattacttgatagtctcaaaagcataatggaatgtaagtgtatatttgcgacttgtag
- - - - - - - - - - - - - - - - - - - - - AAGGAA