1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TACGTGAATCTTCAACTGAATCCGGAAAGATATACTGGTTACACTGGTCCATCTGCAAGAAGGATATGGGATGCTGTCTACTCTGAGAACTGCCCCAAATgtaagttttctctgaaaagcttattcactttaatctcccctccccccaccccttccccaaaaaaatgaaaacaatgagtcgaagtgctgctcctgtagcg...
species | Glycine max |
transcript | GLYMA15G23150.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTGAGAACTGCCCCAAAT ATCCGTCTCAAGAGTTATGCCAAGAGGAAAAGATTTTGTATAAATTGATATEST: gi|13477810|gb|BG507539.1|BG507539
genomic: CTGAGAACTGCCCCAAATgtaagttttc ... tcttctgtagATCCGTCTCAGGAGTTATGCCAAGAGGAAAAGATTTTGTATAAATTGATAT
EST: ATCTGCAAGAAGGATATGGGATGCTGTCTACTCTGAGAACTGCCCCAAAT ATCCGNCTCAAGAGTTATGCCAAGAGGAAAAGATTNTGTATAAATTGATATEST: gi|15815000|gb|BI787275.1|BI787275
genomic: ATCTGCAAGAAGGATATGGGATGCTGTCTACTCTGAGAACTGCCCCAAATgtaagttttc ... tcttctgtagATCCGTCTCAGGAGTTATGCCAAGAGGAAAAGATTTTGTATAAATTGATAT
EST: CTGAGAACTGCCCCAAAT ATCCGTCTCAAGAGTTATGCCAAGAGGAAAAGATTTTGTATAAATTGATATEST: gi|6914968|gb|AW396498.1|AW396498
genomic: CTGAGAACTGCCCCAAATgtaagttttc ... tcttctgtagATCCGTCTCAGGAGTTATGCCAAGAGGAAAAGATTTTGTATAAATTGATAT
EST: GCTGTCTACTCTGAGAACTGCCCCAAAT ATCCGTCTCAGGAGTTATGCCAAGAGGAAAAGATTTTGTATAAATTGATAT
genomic: GCTGTCTACTCTGAGAACTGCCCCAAATgtaagttttc ... tcttctgtagATCCGTCTCAGGAGTTATGCCAAGAGGAAAAGATTTTGTATAAATTGATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACGTGAATCTTCAACTGAATCCGGAAAGATATACTGGTTACACTGGTCCATCTGCAAGAAGGATATGGGATGCTGTCTACTCTGAGAACTGCCCCAAATgtaagttttctctgaaaagcttattcactttaatctcccctccccccaccccttccccaaaaaaatgaaaacaatgagtcgaagtgctgctcctgtagcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaacaa