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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATTGCAATAAAAAGTGGCTGGGATCAATACGGAATTACTTATGGAAGGCCTTCCAAGAATATAGTAATTCGAAACCTTGTTGTTCGCTCTAACGTCAGgtgaagggaattcctaactcaagccacttgtacttattgcatgcctttcagcatcttgtttatcatgcttgctcacaggctgcagccatatattgctgtt...

Basic information

species Glycine max
transcript GLYMA15G19820.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10232121|gb|BE801009.1|BE801009
EST:     CCTTCCAAGAATATAGTAATTCGAAACCTTGTTGTTCGCTCTAACGTCAG                         TGCTGGCATCTCAATANGCAGTGAGATGTCTGGTGGGGTATCCAATGTCCC
genomic: CCTTCCAAGAATATAGTAATTCGAAACCTTGTTGTTCGCTCTAACGTCAGgtgaagggaa ... gatgcaacagTGCTGGCATCTCAATAGGCAGTGAGATGTCTGGTGGGGTATCCAATGTCC-
EST: gi|57575600|gb|CX548575.1|CX548575
EST:     CTTTCCAAGAATATAGTAATTCGAAACCTTGTTGTTCGCTCTAACGTCAG                         TGCTGGCATCTCAATAGGCAGTGAGATGTCTGGTGGGGTATCCAATGTCCT
genomic: CCTTCCAAGAATATAGTAATTCGAAACCTTGTTGTTCGCTCTAACGTCAGgtgaagggaa ... gatgcaacagTGCTGGCATCTCAATAGGCAGTGAGATGTCTGGTGGGGTATCCAATGTCCT
EST: gi|20814904|gb|BQ299382.1|BQ299382
EST:     ATAGTAATTCGAAACCTTGTTGTTCGCTCTAACGTCAG                         TGCTGGCATCTCAATAGGCAGTGAGATGTCTGGTGGGGTATCCAATGTCCT
genomic: ATAGTAATTCGAAACCTTGTTGTTCGCTCTAACGTCAGgtgaagggaa ... gatgcaacagTGCTGGCATCTCAATAGGCAGTGAGATGTCTGGTGGGGTATCCAATGTCCT