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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAACgtaagattgttgtgtatctatattaattgttcatcttttctttttaatccttctggttacatagttatttaaaatcatatgttgttagtgatagtctcttgttttttttttttttctgatttctccatgatattccaattttgagttattgtgttcttctacttgctttttaacag

Basic information

species Glycine max
transcript GLYMA15G19670.4
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G19670.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G130440_T01 (Zea mays), 5'ss of exon 4
GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAACgtaagattgttgtgtatctatattaattgttcatcttttctttttaatccttctggttacatagttatt--taaaatcatatgttgttagtgatagtctcttgttttttttttttttctgatttctccatgatattccaattttgagttattgtgttcttctacttgctttttaacag
||||| || || ||||||||||||  ||| ||||||||  | ||| | |||||||| ||||||||||| ||||||||||    ||| |  ||   | | || |  || |||| |  |     ||      |||||  |      | |||    |  || | | ||  ||  |      |                                                                        
GAAATCATCGACATGTGTGATTATGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacc--tgtcttcct---taagttatatatattttttcatgccagctgaaaactacattatctgcagtgaaagtgcagattttcactg-cagatttgaacat------------------------------------------------------------------------

upper sequence: GLYMA15G19670.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv11s0016g00900.t01 (Vitis vinifera), 5'ss of exon 4
GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAACgtaagattgttgtgtatctatattaattgttcatcttttctttttaatccttctggttacatagttatttaaaatcatatgttgttagtgatagtctcttgttttttttttttttctgatttctccatgatattccaattttgagttattgtgttcttctacttgctttttaacag
|||||| |||||||||||||||||  ||||||| ||||  ||||| | |||||||| || ||||| || |||||| || |      ||   ||||||| | |    |  ||  ||  |  | ||  || |  | ||||     |||| | |      ||| | | ||    ||  |   | |                                                                   
GAAATTGTTGATATGTGTGATTATGCTGTTGGGTTAAGTCGACAAATAAATGGATCCATCATACCTTCTGAACgtgagctca----gtcattatattactggccatttcttatttcatgtttctcttgatggcttagtg----aaaagcttcaagaattatt-acagctctttaatgactat-------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192311334|gb|FK003791.1|FK003791
EST:     TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAAC                         GTCCAGATCATATGATGTTTGAG
genomic: TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAACgtaagattgt ... tttttaacagGTCCAGATCATATGATGTTTGAG
EST: gi|298176954|gb|HO026961.1|HO026961
EST:     TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAAC                         GTCCAGATCATATGATGTTTGAG
genomic: TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAACgtaagattgt ... tttttaacagGTCCAGATCATATGATGTTTGAG
EST: gi|254315873|gb|GR825682.1|GR825682
EST:     TTGTGTTGGGCTAAGCAGACAATTGAATGGGTCAATTATACCATCAGAAC                         GTCCAGATCATATGATGTTTGAG
genomic: TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAACgtaagattgt ... tttttaacagGTCCAGATCATATGATGTTTGAG
EST: gi|192296158|gb|FG989743.1|FG989743
EST:     TTGTGTTGGGCTAAGCAGGCAATTGAATGGATCAATTATACCATCAGAAC                         GTCCAGATCATATGATGTTTGAG
genomic: TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAACgtaagattgt ... tttttaacagGTCCAGATCATATGATGTTTGAG
EST: gi|192311335|gb|FK003792.1|FK003792
EST:     TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAAC                         GTCCAGATCATATGATGTTTGAG
genomic: TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAACgtaagattgt ... tttttaacagGTCCAGATCATATGATGTTTGAG
EST: gi|151412062|gb|EV281874.1|EV281874
EST:     TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAAC                         GTCCAGATCATATGATGTTTGAG
genomic: TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAACgtaagattgt ... tttttaacagGTCCAGATCATATGATGTTTGAG
EST: gi|15813460|gb|BI785735.1|BI785735
EST:     TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAAC                         GTCCAGATCATATGATGTTTGAG
genomic: TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAACgtaagattgt ... tttttaacagGTCCAGATCATATGATGTTTGAG
EST: gi|27446368|gb|CA953491.1|CA953491
EST:     TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAAC                         GTCCAGATCATATGATGTTTGAG
genomic: TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAACgtaagattgt ... tttttaacagGTCCAGATCATATGATGTTTGAG
EST: gi|254317668|gb|GR826652.1|GR826652
EST:     TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAAC                         GTCCAGATCATATGATGTTTGAG
genomic: TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAACgtaagattgt ... tttttaacagGTCCAGATCATATGATGTTTGAG
EST: gi|209718196|gb|BW657828.1|BW657828
EST:     TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAAC                         GTCCAGATCATATGATGTTTGAG
genomic: TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAACgtaagattgt ... tttttaacagGTCCAGATCATATGATGTTTGAG