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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTTAACCATAAGCAAGAAGCTCCCGTGGATGTTTTTCCCTGATATAATTCCCTTGGATCATCCAATATTTGATATTATCAACTCAACAAATCCAGAGgtaattactattctcttctaagttcatttgttcataataagatataaccaattggttgttttcgcttttcatgataaatacatacgttaccaatgtgtcaccctttgttttaactgtgttgtacctgctacaaaagtaaaaaatgttctggttatctgcttaatgtaattgtgcaaatctttgtggcag

Basic information

species Glycine max
transcript GLYMA15G16830.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G16830.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM5G807767_T03 (Zea mays), 5'ss of exon 3
GATGTTAACCATAAGCAAGAAGCTCCCGTGGATGTTTTTCCCTGATATAATTCCCTTGGATCATCCAATATTTGATATTATCAACTCAACAAATCCAGAGgtaattactattctcttctaagttcatttgttcataataagatataaccaattggttgttttcgcttttcatgataaatacatacgttaccaatgtgtcaccctttgttttaactgtgttgtacctgctacaaaagtaaaaaatgttctggttatctgcttaatgtaattgtgcaaatctttgtggcag
|||| | || ||||   | |||   || ||||||||||||||||| || |||||  | |  ||||| ||||||||| ||||| | |||||| |||||||||||  |            | |  || ||||||      |||| | |||  ||      | ||    || | | |  | |   ||       ||||| ||| |   |   ||||  |  ||||                                                                   
GATGCTGACTATAACTCAAAAGAAACCTTGGATGTTTTTCCCTGACATTATTCCACTAGGCCATCCTATATTTGATGTTATCGAGTCAACAGATCCAGAGgtaggtgga---------tcaaatcttttgtt---gcaaagagaaaactgatc-----tcttaaaattccgtcactagtttctat----tgaatgt-tcagcgaattagttaatagctttgt-------------------------------------------------------------------

upper sequence: GLYMA15G16830.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0011g01080.t01 (Vitis vinifera), 5'ss of exon 4
GATGTTAACCATAAGCAAGAAGCTCCCGTGGATGTTTTTCCCTGATATAATTCCCTTGGATCATCCAATATTTGATATTATCAACTCAACAAATCCAGAGgtaattactattctcttctaagttcatttgttcataataagatataaccaattggttgttttcgcttttcatgataaatacatacgttaccaatgtgtcaccctttgttttaactgtgttgtacctgctacaaaagtaaaaaatgttctggttatctgcttaatgtaattgtgcaaatctttgtggcag
||||||||| ||||| || |||||||| |||||||||||||| || ||  | ||  |||  ||||| ||||||||||||||||||||||| ||||| ||||||||   | | | ||||| |  |  | ||   | ||     ||| || || || | |||||     |  ||| |  ||  | | | || |  | ||||   | |  |||                                                                               
GATGTTAACAATAAGAAAAAAGCTCCCATGGATGTTTTTCCCAGACATCGTACCAGTGGGACATCCTATATTTGATATTATCAACTCAACCAATCCGGAGgtaat---tgtgcccttctta--ttgtctg--aaaaaatgcttattactaactgatagttttga---tcaatgtttgat-tagagggtatctttctgtctttcctcttttc------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6483112|gb|AW202304.1|AW202304
EST:     TTCCCTTGGATCATCCAATATTTGATATTATCAACTCAACAAATCCAGAG                         ACAGATTGGGACCTAAGGTTAGCATGCCTTCTCTTATATGCATTTGACTGT
genomic: TTCCCTTGGATCATCCAATATTTGATATTATCAACTCAACAAATCCAGAGgtaattacta ... tttgtggcagACAGATTGGGACCTAAGGTTAGCATGCCTTCTCTTATATGCATTTGACTGT
EST: gi|7691176|gb|AW759308.1|AW759308
EST:     TTCCCTTGGATCATGCAATATTTGATATTATCAACTCAACAAATCCAGAG                         ACAGATTGGGACCTAATGTTAGCATGCCTTCTCTTATATGCATNTGAC
genomic: TTCCCTTGGATCATCCAATATTTGATATTATCAACTCAACAAATCCAGAGgtaattacta ... tttgtggcagACAGATTGGGACCTAAGGTTAGCATGCCTTCTCTTATATGCATTTGAC
EST: gi|151409002|gb|EV278810.1|EV278810
EST:     TTCCCTTGGATCATCCAATATTTGATATTATCAACTCAACAAATCCAGAG                         ACAGATTGGGACCTAAGGTTAGCATGCCTTCTCTTATATGCATTTGACTGT
genomic: TTCCCTTGGATCATCCAATATTTGATATTATCAACTCAACAAATCCAGAGgtaattacta ... tttgtggcagACAGATTGGGACCTAAGGTTAGCATGCCTTCTCTTATATGCATTTGACTGT