Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGTGAAAGTTGTCTCTTCCAACAATGTGGTGACTGCCAAAGACATCATCATTGCCACTGGTTCAGTTCCTTTTGTTCCAAAGGGCATTGAGGTTGATGgtacgtcatacacttcaagttttatcttttcaattcatgacattattattttatgttaacacctgtagttttactcattgaaaagacttaagttataggc...

Basic information

species Glycine max
transcript GLYMA15G15310.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G15310.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os05g06460.1 (Oryza sativa), 5'ss of exon 4
AAAGTGAAAGTTGTCTCTTCCAACAATGTGGTGACTGCCAAAGACATCATCATTGCCACTGGTTCAGTTCCTTTTGTTCCAAAGGGCATTGAGGTTGATGgtacgtcatacacttcaagttttatcttttcaattcatg-acattatt-attttatgttaacacctgtagttttactcattgaaaagacttaagttataggc--
 | |  |||||||  | | |  |||| |   | ||||| |   | ||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||| ||  |||  ||    | || ||||      ||||| |  | ||| | ||     ||    |   | |     |    | ||    | || |  |      
TATGGAAAAGTTGGTTTTCCAGACAAAGAAATCACTGCAAGGAATATCATCATTGCTACTGGATCAGTTCCTTTTGTTCCCAAGGGCATAGAGGTTGATGgtaagtactaccttt----tcttctcttgatggatcatgcatctcatttagttagctctagtttccagactgaacattgaagcaagtgatcaaatgctgaaaga

upper sequence: GLYMA15G15310.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G073774_T01 (Zea mays), 5'ss of exon 4
AAAGTGAAAGTTGTCTCTTCCAACAATGTGGTGACTGCCAAAGACATCATCATTGCCACTGGTTCAGTTCCTTTTGTTCCAAAGGGCATTGAGGTTGATGgtacgtcatacacttcaagttttatcttttcaattcatgacattattattttatgttaacacctgtagttttactcattgaaaagacttaagttataggc
 | |  |||| ||  |   |  | || |   | |||||||   ||||||| || |||||||||||||||||||||||||| || || |||||| |||||||||  |  | | ||    |  || ||||   |  |    |  | | || | || |  |      | | | |    |||     ||| |||   || |   
TATGGAAAAGCTGGTTTCCCAGATAAAGAAATCACTGCCAGGAACATCATAATCGCCACTGGTTCAGTTCCTTTTGTTCCGAAAGGGATTGAGATTGATGgtaaatgcttctctgtttgagttctcttcaaatattgaaaactaagtactataggaaagttatggaattatggtgcatgctggagatttataataaaaaa

upper sequence: GLYMA15G15310.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G145595_T01 (Zea mays), 5'ss of exon 4
AAAGTGAAAGTTGTCTCTTCCAACAATGTGGTGACTGCCAAAGACATCATCATTGCCACTGGTTCAGTTCCTTTTGTTCCAAAGGGCATTGAGGTTGATGgta--cgtcatacacttcaagttttatcttttcaattcatgacattattattttatgttaacacctgtagttttactcattgaaaag-acttaagttataggc---
 | | ||||||||  |   |  ||||||   | ||||| | | ||||||| ||||||||||| || ||||||||||| || |||||||||||  | |||||||       |    ||  |  || || | |    ||| ||| |     | ||| |      || | | |  | |   | ||| ||  | |   |||  | ||   
TATGGGAAAGTTGGTTTCCCAGACAATGAAATCACTGCTAGAAACATCATAATTGCCACTGGATCTGTTCCTTTTGTCCCCAAGGGCATTGAAATAGATGgtagttactgtttttttggaacttcatgtctgtt-ttcttgaga-----actttgtcccgttacatttggcctaatgaaatgagaaacaatgctgttccaagctcc

upper sequence: GLYMA15G15310.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G16950.1 (Arabidopsis thaliana), 5'ss of exon 4
---AAAGTGAAAGTTGTCTCTTCCAACAATGTGGTGACTGCCAAAGACATCATCATTGCCACTGGTTCAGTTCCTTTTGTTCCAAAGGGCATTGAGGTTGATGgtacgtcatacacttcaagttttatcttttcaattcatgacattattattttatgttaacacctgtagttttactcattgaaaagacttaagttataggc
   || || |||  ||         ||||| |  | ||||| ||||| || |||||||||||||| || || || ||||| || || || ||||| |||||||||||||       ||      |    || | ||   |   |||    | || ||  ||   | || |  |||||   |||      |             
CAAAAGGTTAAATATGGGAAG---GACAATATTATTACTGCAAAAGATATAATCATTGCCACTGGATCTGTGCCGTTTGTCCCTAAAGGAATTGAAGTTGATGgtacgtttcttgttttggacgtagagttgttaaggga--gcatgcagacttgat--tattccttgaatgtttacattttggcgctgcag-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27426345|gb|CA937865.1|CA937865
EST:     CATTGCCACTGGTTCAGTTCCTTTTGTTCCAAAGGGCATTGAGGTTGATG                         GAAAGACTGTGATTACCAGTGACCATGCACTCAAACTGGAGACTGTTCCTG
genomic: CATTGCCACTGGTTCAGTTCCTTTTGTTCCAAAGGGCATTGAGGTTGATGgtacgtcata ... atgcattcagGAAAGACTGTGATTACCAGTGACCATGCACTCAAACTGGAGACTGTTCCTG
EST: gi|13562493|gb|BG550713.1|BG550713
EST:     CATTGCCACTGGTTCAGTTCCTTTTGTTCCAAAGGGCATTGAGGTTGATG                         GAAAGACTGTGATTACCAGTGACCATGCACTCAAACTGGAGACTGTTCCTG
genomic: CATTGCCACTGGTTCAGTTCCTTTTGTTCCAAAGGGCATTGAGGTTGATGgtacgtcata ... atgcattcagGAAAGACTGTGATTACCAGTGACCATGCACTCAAACTGGAGACTGTTCCTG