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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGACACTGCTTTCGAGAAACAGAGTGCTCTTTTTGCTTTGGCAATATCAGATATTGTTCTGATAAACATgtaagtttttaggtctagattattgctttataattgattggatgaataagattctggggcgatccttgaaggcattatgcttggctattttaaagtttct...

Basic information

species Glycine max
transcript GLYMA15G13380.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G13380.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv10s0116g00810.t01 (Vitis vinifera), 5'ss of exon 3
GATGACACTGCTTTCGAGAAACAGAGTGCTCTTTTTGCTTTGGCAATATCAGATATTGTTCTGATAAACATgtaagtttttaggtctagattattgctttataattga---ttggatgaataagattctggggcgatccttgaaggcattatgc-ttggctattttaaagtttct
||||| ||||| || |||||||| |||||  | |||||||||||||||||||| ||||| ||||||||||||| |||||| || |    ||| | |   | | | ||    ||   |   | | ||  |  |  |||  ||    ||||   |   | ||| |  |  |  |   
GATGATACTGCATTTGAGAAACAAAGTGCCTTGTTTGCTTTGGCAATATCAGACATTGTGCTGATAAACATgtgagtttt-agtttagcattctagtgcttttaatgcctttttctttccttacatgataagttgatggttatctgcatctcgtgctagctgtggttgatct---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11689067|gb|BF596743.1|BF596743
EST:     CAGAGTGCTCTTTTTGCTTTGGCAATATCAGATATTGTTCTGATAAACAT                         GTGGTGTCATGATATTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAA
genomic: CAGAGTGCTCTTTTTGCTTTGGCAATATCAGATATTGTTCTGATAAACATgtaagttttt ... ttattcacagGTGGTGTCATGATATTGGTCGAGAACAAGCAGCAAATAAACCTCTTTTAAA