1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCATATTTTGTGCAGTATCATACTTGAAACTGATCCAAATGTTATAGCTGGGAAAGTTGCTAGTAATAGTATAGATTCTGGAGCTCCTTTGTCCGAACAGgtatagtacatccttcactaatacgcttcactttaataccaaaaaagaaaatcgacaataaattcacttatttgaggaataactgtatttattcctgttgcag
species | Glycine max |
transcript | GLYMA15G13190.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGAAAGTTGCTAGTAATAGTATAGATTCTGGAGCTCCTTTGTCCGAACAG ACTCTAAGTCAAGCATTGGCCACAGCCAGGGAACATCTTGCAAGGTCCCTTEST: gi|192298900|gb|FG987645.1|FG987645
genomic: GGAAAGTTGCTAGTAATAGTATAGATTCTGGAGCTCCTTTGTCCGAACAGgtatagtaca ... cctgttgcagACACTAAGTCAAGCATTGGCCACAGCCAGGGAACATCTTGCAAGGTCCCTT
EST: GGAAAGTTGCTAGTAATAGTATAGATTCTGGAGCTCCTTTGTCCGAACAG ACACTAAGTCAAGCATTGGCCACAGCCAGGGAACATCTTGCAAGGTCCCTTEST: gi|207780333|gb|GD752142.1|GD752142
genomic: GGAAAGTTGCTAGTAATAGTATAGATTCTGGAGCTCCTTTGTCCGAACAGgtatagtaca ... cctgttgcagACACTAAGTCAAGCATTGGCCACAGCCAGGGAACATCTTGCAAGGTCCCTT
EST: AAAGTTGCTTAGTAATAGTATAGATTTCTGGAGCTCCTTTGTCCGAACAG ACTCTAAGTCAAGCATTGGCCACAGCCAGGGAACATCTTGCAAGGTCCCTTEST: gi|193728955|gb|FK665623.1|FK665623
genomic: AAAGTTGC-TAGTAATAGTATAGA-TTCTGGAGCTCCTTTGTCCGAACAGgtatagtaca ... cctgttgcagACACTAAGTCAAGCATTGGCCACAGCCAGGGAACATCTTGCAAGGTCCCTT
EST: GGAAAGTTGCTAGTAATAGTATAGATTCTGGAGCTCCTTTGTCCGAACAG ACTCTAAGTCAAGCATTGGCCACAEST: gi|193661760|gb|FK606550.1|FK606550
genomic: GGAAAGTTGCTAGTAATAGTATAGATTCTGGAGCTCCTTTGTCCGAACAGgtatagtaca ... cctgttgcagACACTAAGTCAAGCATTGGCCACA
EST: GGAAAGTTGCTAGTAATAGTACAGATTCTGGAGCTCCTTTGTCCGAACAG ACTCTAAGTCAAGCATTGGCCACAGCCAGGGAACATCTTGCAAGGTCCCTTEST: gi|193675352|gb|FK619114.1|FK619114
genomic: GGAAAGTTGCTAGTAATAGTATAGATTCTGGAGCTCCTTTGTCCGAACAGgtatagtaca ... cctgttgcagACACTAAGTCAAGCATTGGCCACAGCCAGGGAACATCTTGCAAGGTCCCTT
EST: GGAAAGTTGCTAGTAATAGTATAGATTCTGGAGCTCCTTTGTCCGAACAG ACTCTAAGTCAAGCATTGGCCACAGCCAGGGAACATCTTGCAAGGTCCCTTEST: gi|193700488|gb|FK635509.1|FK635509
genomic: GGAAAGTTGCTAGTAATAGTATAGATTCTGGAGCTCCTTTGTCCGAACAGgtatagtaca ... cctgttgcagACACTAAGTCAAGCATTGGCCACAGCCAGGGAACATCTTGCAAGGTCCCTT
EST: GGAAAGTTGCTAGTAATAGTATAGATTCTGGAGCTCCTTTGTCCGAACAG ACTCTAAGTCAAGCATTGGCCACAGCCAGGGAACATCTTGCAAGGTCCCTTEST: gi|193558188|gb|FK514881.1|FK514881
genomic: GGAAAGTTGCTAGTAATAGTATAGATTCTGGAGCTCCTTTGTCCGAACAGgtatagtaca ... cctgttgcagACACTAAGTCAAGCATTGGCCACAGCCAGGGAACATCTTGCAAGGTCCCTT
EST: GGAAAGTTGCTAGTAATAGTATAGATTCTGGAGCTCCTTTGTCCGAACAG ACTCTAAGTCAAGCATTGGCCACAGCCAGGGAACATCTTGCAAGGTCCCTT
genomic: GGAAAGTTGCTAGTAATAGTATAGATTCTGGAGCTCCTTTGTCCGAACAGgtatagtaca ... cctgttgcagACACTAAGTCAAGCATTGGCCACAGCCAGGGAACATCTTGCAAGGTCCCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATATTTTGTGCAGTATCATACTTGAAACTGATCCAAATGTTATAGCTGGGAAAGTTGCTAGTAATAGTATAGATTCTGGAGCTCCTTTGTCCGAACAGgtatagtacatccttcactaatacgcttcactttaataccaaaaaagaaaatcgacaataaattcacttatttgaggaataactgtatttattcctgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT