1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTTCATATCTTTTAGAAAGCCCTGGCGCTGATAACTCATCTCCAAAGTTGCCAACTTCAGATACAAATGAgtaagaatttgcattaattcataaaaaaagatttttttcttctggctgatgtctcaatggatttgaattaccaaattgagtgagtgattaattttatgcctag
species | Glycine max |
transcript | GLYMA15G12930.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCTGGCGCTGATAACTCATCTCCAAAGTTGCCAACTTCAGATACAAATGA GGGTTATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTGCAAAGTAAEST: gi|58021470|gb|CX708211.1|CX708211
genomic: CCTGGCGCTGATAACTCATCTCCAAAGTTGCCAACTTCAGATACAAATGAgtaagaattt ... ttatgcctagGGGTTATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTGCAAAGTAA
EST: TGGCGCTGATAATTCATCTCCAAAGTTGCCAACTTCAGATACAAATGA GGGTTATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTGCAAAGTAAEST: gi|58025295|gb|CX712036.1|CX712036
genomic: TGGCGCTGATAACTCATCTCCAAAGTTGCCAACTTCAGATACAAATGAgtaagaattt ... ttatgcctagGGGTTATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTGCAAAGTAA
EST: GCGCTGATAACTCATCTCCAAAGTTGCCAACTTCAGATACAAATGA GGGTTATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTGCAAAGTAAEST: gi|192314434|gb|FK008404.1|FK008404
genomic: GCGCTGATAACTCATCTCCAAAGTTGCCAACTTCAGATACAAATGAgtaagaattt ... ttatgcctagGGGTTATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTGCAAAGTAA
EST: CCTGGCGCTGATAGCTCATCTCCAAAGTTGCCAACTTCAGATACAAATGA GGGTTATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTGCAAAGTAAEST: gi|192314435|gb|FK008405.1|FK008405
genomic: CCTGGCGCTGATAACTCATCTCCAAAGTTGCCAACTTCAGATACAAATGAgtaagaattt ... ttatgcctagGGGTTATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTGCAAAGTAA
EST: CCTGGCGCTGATAGCTCATCTCCAAAGTTGCCAACTTCAGATACAAATGA GGGTTATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTGCAAAGTAAEST: gi|57576039|gb|CX549010.1|CX549010
genomic: CCTGGCGCTGATAACTCATCTCCAAAGTTGCCAACTTCAGATACAAATGAgtaagaattt ... ttatgcctagGGGTTATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTGCAAAGTAA
EST: CCTGGCGCTGATAACTCATCTCCAAAGTTGCCAACTTCAGATACAAATGA GGGTTATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTGCAAAGTAAEST: gi|18730225|gb|BM525757.1|BM525757
genomic: CCTGGCGCTGATAACTCATCTCCAAAGTTGCCAACTTCAGATACAAATGAgtaagaattt ... ttatgcctagGGGTTATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTGCAAAGTAA
EST: CCTGGCGCTGATAACTCATCTCCAAAGTTGCCAACTTCAGATACAAATGA GGGTTATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTGCAAAGTAAEST: gi|208270291|gb|GE069101.1|GE069101
genomic: CCTGGCGCTGATAACTCATCTCCAAAGTTGCCAACTTCAGATACAAATGAgtaagaattt ... ttatgcctagGGGTTATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTGCAAAGTAA
EST: CCTGGCGCTGATAACTCATCTCCAAAGTTGCCAACTTCAGATACAAATGA GGGTTATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTGCAAAGTAAEST: gi|58024664|gb|CX711405.1|CX711405
genomic: CCTGGCGCTGATAACTCATCTCCAAAGTTGCCAACTTCAGATACAAATGAgtaagaattt ... ttatgcctagGGGTTATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTGCAAAGTAA
EST: CTGGCGCTGATAACTCATCTCCAAAGTTGCC-ACTTTCAGATACAAATGA GGGTTATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTGCAAAGTAAEST: gi|57575877|gb|CX548848.1|CX548848
genomic: CTGGCGCTGATAACTCATCTCCAAAGTTGCCAAC-TTCAGATACAAATGAgtaagaattt ... ttatgcctagGGGTTATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTGCAAAGTAA
EST: AAAGTTGCCAACTTCAGATACAAATGA GGGTTATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTGCAAAGTAA
genomic: AAAGTTGCCAACTTCAGATACAAATGAgtaagaattt ... ttatgcctagGGGTTATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTGCAAAGTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCATATCTTTTAGAAAGCCCTGGCGCTGATAACTCATCTCCAAAGTTGCCAACTTCAGATACAAATGAgtaagaatttgcattaattcataaaaaaagatttttttcttctggctgatgtctcaatggatttgaattaccaaattgagtgagtgattaattttatgcctag
- - - - - - - - - - - - - GCTGAT