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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACTTAAGTGATAACAAGATCCATGATACAATTCCCTACCAGTTGCCACCGAATCTTACGAGCCTgtaatgtttgcctacatttacacgctcatttcacttcttgatcattttcactttgctactttatttgaaatgttattttttttttctgttgctaaactgtgtcattgcctttcaattgggacaatcag

Basic information

species Glycine max
transcript GLYMA15G11820.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G11820.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G22130.1 (Arabidopsis thaliana), 5'ss of exon 4
TGACTTAAGTGATAACAAGATCCATGATACAATTCCCTACCAGTTGCCACCGAATCTTACGAGCCTgtaatgtttgcctacatttacacgctcatttcacttcttgatcattttcactttgctactttatttgaaatgttattttttttttctgttgctaaactgtgtcattgcctttcaattgggacaatcag
 ||  | |||| |||||  |||||||||||| |||| || ||||||||||||||||| || |||||||||||     ||   ||| |    |   ||   |  |  |  |||| | ||  | |  |  ||||||||  | |   |||        ||  |  | |                             
GGATGTTAGTGGTAACAGCATCCATGATACACTTCCATATCAGTTGCCACCGAATCTCACAAGCCTgtaatg-----ctgtgtttgc---ttagctttgttgttatagtatttactctcagtt-ttcaatttgaaac-taacagtttaaagaaaatgtaatgcag-----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7925311|gb|AW831398.1|AW831398
EST:     AAGATCCATGATACAATTCCCTACCAGTTGCCACCGAATCTTACGAGCCT                         GAATTTTGCAAGAAATAATTTATCTGGAAATCTTCCTTATTCCATTTCTGC
genomic: AAGATCCATGATACAATTCCCTACCAGTTGCCACCGAATCTTACGAGCCTgtaatgtttg ... ggacaatcagGAATTTTGCAAGAAATAATTTATCTGGAAATCTTCCTTATTCCATTTCTGC