1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCAGAAAATGAACCCTTCCAACCCTATGGATCAATCCACTGCAGAAGCCACAATGAGAAAAGCTCGTGTATCAGTTCGTGCCCGATCAGAAGCTCCCATGgtacgtattataattatactatgtatattacatgttttcattaaccaattaagtaattctcaaactaaattatctgatttattattgttgcag
species | Glycine max |
transcript | GLYMA15G11680.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAATGAGAAAAGCTCGTGTATCAGTTCGTGCCCGATCAGAAGCTCCCATG ATCAGTGATGGATGCCAATGGAGAAAATATGGACAAAAAATGGCCAAGGGGEST: gi|254334382|gb|GR844167.1|GR844167
genomic: CAATGAGAAAAGCTCGTGTATCAGTTCGTGCCCGATCAGAAGCTCCCATGgtacgtatta ... attgttgcagATCAGTGATGGATGCCAATGGAGAAAATATGGACAAAAAATGGCCAAGGGG
EST: CAATGAGAAAAGCTCGTGTATCAGTTCGTGCCCGATCAGAAGCTCCCATG ATCAGTGATGGATGCCAATEST: gi|15285166|gb|BI469057.1|BI469057
genomic: CAATGAGAAAAGCTCGTGTATCAGTTCGTGCCCGATCAGAAGCTCCCATGgtacgtatta ... attgttgcagATCAGTGATGGATGCCAAT
EST: CAATGAGAAAAGCTCGTGTATCAGTTCGTGCCCGATCAGAAGCTCCCATG ATCAGTGATGGATGCCAATGGAGAAAATATGGACAAAAAATGGCCAAGGGGEST: gi|20448856|gb|BQ252980.1|BQ252980
genomic: CAATGAGAAAAGCTCGTGTATCAGTTCGTGCCCGATCAGAAGCTCCCATGgtacgtatta ... attgttgcagATCAGTGATGGATGCCAATGGAGAAAATATGGACAAAAAATGGCCAAGGGG
EST: CAATGAGAAAAGCTCGTGTATCAGTTCGTGCCCGATCAGAAGCTCCCATG ATCAGTGATGGATGCCAATGGAGAAAATATGGACAAAAAATGGCCAAGGGGEST: gi|254346516|gb|GR856238.1|GR856238
genomic: CAATGAGAAAAGCTCGTGTATCAGTTCGTGCCCGATCAGAAGCTCCCATGgtacgtatta ... attgttgcagATCAGTGATGGATGCCAATGGAGAAAATATGGACAAAAAATGGCCAAGGGG
EST: CAATGAGAAAAGCTCGTGTATCAGTTCGTGCCCGATCAGAAGCTCCCATG ATCAGTGATGGATGCCAATGGAGAAAATATGGACAAAAA-TGGCCCAAGGGEST: gi|17400985|gb|BM177767.1|BM177767
genomic: CAATGAGAAAAGCTCGTGTATCAGTTCGTGCCCGATCAGAAGCTCCCATGgtacgtatta ... attgttgcagATCAGTGATGGATGCCAATGGAGAAAATATGGACAAAAAATGGCC-AAGGG
EST: CAATGAGAAAAGCTCGTGTATCAGTTCGTGCCCGATCAGAAGCTCCCATG ATCAGTGATGGATGCCAATGGAGAAA-TATGGACAAAAAAEST: gi|254322703|gb|GR835525.1|GR835525
genomic: CAATGAGAAAAGCTCGTGTATCAGTTCGTGCCCGATCAGAAGCTCCCATGgtacgtatta ... attgttgcagATCAGTGATGGATGCCAATGGAGAAAATATGGACAAAAAA
EST: CAATGAGAAAAGCTCGTGTATCAGTTCGTGCCCGATCAGAAGCTCCCATG ATCAGTGATGGATGCCAATGGAGAAAATATGGACAAAAAATGGCCAAGGGGEST: gi|24136203|gb|BU926713.1|BU926713
genomic: CAATGAGAAAAGCTCGTGTATCAGTTCGTGCCCGATCAGAAGCTCCCATGgtacgtatta ... attgttgcagATCAGTGATGGATGCCAATGGAGAAAATATGGACAAAAAATGGCCAAGGGG
EST: CAATGAGAAAAGCTCGTGTATCAGTTCGTGCCCGATCAGAAGCTCCCATG ATCAGTGATGGATGCCAATGGAGAAAATATGGACAAAAAATGGCCAAGGGGEST: gi|17400628|gb|BM177410.1|BM177410
genomic: CAATGAGAAAAGCTCGTGTATCAGTTCGTGCCCGATCAGAAGCTCCCATGgtacgtatta ... attgttgcagATCAGTGATGGATGCCAATGGAGAAAATATGGACAAAAAATGGCCAAGGGG
EST: CAATGAGAAAAGCTCGTGTATCAGTTCGTGCCCGATCAGAAGCTCCCATG ATCAGTGATGGATGCCAATGGAGAAAATATGGACAAAAAATGGCCAAGGGG
genomic: CAATGAGAAAAGCTCGTGTATCAGTTCGTGCCCGATCAGAAGCTCCCATGgtacgtatta ... attgttgcagATCAGTGATGGATGCCAATGGAGAAAATATGGACAAAAAATGGCCAAGGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGAAAATGAACCCTTCCAACCCTATGGATCAATCCACTGCAGAAGCCACAATGAGAAAAGCTCGTGTATCAGTTCGTGCCCGATCAGAAGCTCCCATGgtacgtattataattatactatgtatattacatgttttcattaaccaattaagtaattctcaaactaaattatctgatttattattgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC