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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTATGTTGCAACACGGTGGTATAGGGCTCCTGAGTTGTGTGGATCCTTTTTTTCCAAGgtgcaatataagttatgactattatttaagatcgttggtcaattttatccaatatgatttgcccctgcttgatatgatttactaagttaaaaagtttgat...

Basic information

species Glycine max
transcript GLYMA15G10940.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G10940.4 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0020g02530.t01 (Vitis vinifera), 5'ss of exon 4
GATTATGTTGCAACACGGTGGTATAGGGCTCCTGAGTTGTGTGGATCCTTTTTTTCCAAGgtgcaatataagttatgactattatttaagatcgttggtcaattttatccaatatgatttgcccctgcttgatatgatttactaagttaaaaagtttgat--
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GATTATGTTGCAACAAGGTGGTACAGGGCACCTGAATTGTGTGGTTCATTTTTCTCCAAGgtaaaaggattgtcaccactttctattgattgcgctaatagcttgaattttccctgtgtcaccattattcttttt--ctatctaaactgctgaacctttttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10238909|gb|BE807805.1|BE807805
EST:     CAACACGGTGGTATAGGGCTCCTGAGTTGTGTGGATCCTTTTTNTCCAAG                         TATACACCAGCTATAGACATATGGAGCATTGGCTGCATTGTTGCTGAACTT
genomic: CAACACGGTGGTATAGGGCTCCTGAGTTGTGTGGATCCTTTTTTTCCAAGgtgcaatata ... tgtttttcagTATACACCAGCTATAGACATATGGAGCATTGGCTGCATTTTTGCTGAACTT