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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATGTGGCAGCTCTTTATGATGGTAAAATTCTTTTTATATTTGGAGGAGCATCAAAATCTAGGACCTTGAATGACTTGTATTCACTTGACTTTGAAACAgtgagctctcatatcagtgaaacttttttatttctccaagatgaagattaaatgctcattcattgtgtaatttaatgaaagtatatgttctttcag

Basic information

species Glycine max
transcript GLYMA15G10310.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G10310.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv05s0020g01740.t01 (Vitis vinifera), 5'ss of exon 10
CCATGTGGCAGCTCTTTATGATGGTAAAATTCTTTTTATATTTGGAGGAGCATCAAAATCTAGGACCTTGAATGACTTGTATTCACTTGACTTTGAAACAgt-----gagctctcatatcagtgaaactt------------ttttatttctccaa-gatgaaga-ttaaatgctcattcattgtgtaatttaatgaaagtatatgttctttcag
 |||||||||||||| ||||||| ||||||||||||||| || ||||||| |||||||||||||||  ||||||||||||| || |||||||||||||| ||     ||||   |||     || |  ||             |||||||||  || |||||| | ||| ||  |||||  |||   | ||| ||    | || | || | ||||
TCATGTGGCAGCTCTCTATGATGATAAAATTCTTTTTATTTTCGGAGGAGGATCAAAATCTAGGACTCTGAATGACTTGTACTCTCTTGACTTTGAAACGgtttgtagagcaaccattcttctggagtttattgtcaaacaactttatttctataatgatgaaaacttacatcttcattagttg---attttgatatgtggattt-ttgtctcag