Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctattctgaagccttttgttttctgttgattataaatacatcataattattagtttgaagcattcattcaactcatgtgttttatatttggaat...

Basic information

species Glycine max
transcript GLYMA15G08210.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G08210.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G054136_T06 (Zea mays), 5'ss of exon 3
GGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtcta-ttctgaagccttttgttttctgttgattataaatacatcataattattagtttgaagcattcattcaactcatgtgttttatatttggaat-
|| ||||||||||| || |  || || || ||||||||||| || ||||||||||||||||| |||||  ||||||||||||| ||  |||| ||||| ||| |    | |||  |       |||  |||    |  ||   |  |   | ||| ||| | ||||   |  ||   | |  |||      |   ||     
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGCTCCATAGGGgtatagagacttcctatttacagtgtactctcagcaccatcttt-tactctgattctta-tctgaacattcgatatcaattctgtagggactccctgcttcc

upper sequence: GLYMA15G08210.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G054136_T02 (Zea mays), 5'ss of exon 3
GGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctattctgaagccttttgttttctgttgattataaatacatcataattattagtttgaagcattcattcaactcatgtgttttatatttggaat
|| ||||||||||| || |  || || || ||||||||||| || ||||||||||||||||| |||||  ||||||||||||| ||  |||| ||||| ||| |         ||  | |  | ||| | ||  | | | |  ||     |  | ||| | |||  |  | ||   |    |   | | |  | || |  
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGCTCCATAGGGgtata--------gagacttcctatttacagtgtactctcagcac----catcttttactctgattc--ttatctgaacattcgatatcaattctgtag-

upper sequence: GLYMA15G08210.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G054136_T01 (Zea mays), 5'ss of exon 4
GGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctattctgaagccttttgttttctgttgattataaatacatcataattattagtttgaagcattcattcaactcatgtgttttatatttggaat
|| ||||||||||| || |  || || || ||||||||||| || ||||||||||||||||| |||||  ||||||||||||| ||  |||| ||||| ||| |         ||  | |  | | | | ||  | | | || ||     |  | ||| | |||  |  | ||   |    |   | | |  | || |  
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGCTCCATAGGGgtata--------gagacttcctatgtccagtgtactctcaacac----catcttttactctgattc--ttatctgaacattcgatatcaattctgtag-

upper sequence: GLYMA15G08210.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 4
GGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctattctgaagccttttgttttctgttga--ttataaatacatcataattattagtttgaagcattcattc--aactcatgt-gttttatatttggaat----
|| || || ||||| || |  || |||||||| |||||||| || ||||||||||| ||||| ||||| || || ||||||||||| ||||| ||  |||||   |  |      | | |||  |   || |||    |||||     |  || || |  || ||     ||   |    | | |  | ||||  || | ||       
GGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaacataataccttttcttacacttttgcatctataatggatttgtatttgtgtgtgtgtgtgttttgctgtagattaacattgtttcgtaatgggtgaacag

upper sequence: GLYMA15G08210.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv03s0017g01350.t01 (Vitis vinifera), 5'ss of exon 4
GGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctattctgaagccttttgttttctgttgattataaatacatcataattattagtttgaagcattcattcaactcatgtgttttatatttggaat---------------------
|||||||| ||||| || |  || ||||| ||||||||||| ||||| |||||||| |||||  |||| ||||| |||||| | || ||||| ||||| |||  ||  |  |||   |      | ||||  |  ||| |||   |||| ||   |||  || |    || || ||| |   || | | | ||||   |                      
GGCTATGTTTTCAAGATCATGGGTGGTTGTGACAAGCAAGGGTTTCCCATGAAGCAGGGAGTACTGACTCCTGGCCGTGTTAGTCTTTTGCTTCATAGGGgtgagtaaa--ctgggac------tgttctaatccttaaaaactgatcacaacccttaagttcatatttttatgcaagttgggtctatgagatttattacactttatgcttatttgagcag

upper sequence: GLYMA15G08210.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 4
GGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgt---ctattctgaagccttttgttttct-----gttgatta--taaataca--tcataattattagtttgaagc--attcattcaactcatgtgttttatatttggaat---------------------------------------------------------------------
|| ||||| |||||||| |  ||||| || ||||||||||| |||||||||||||| |||||  ||||||| || || || |  ||  |||| || ||||||| ||   ||  |||    | || ||  |  |     ||  |  |  ||||| ||  |  ||  ||||  |||| ||   |||    ||  |  |    ||   |||  |  |                                                                     
GGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAGgttggtagactggtctactactttgtgcatatttagatgtgaaacaattaaatgcagtttttatatattgttttggagtttatttgggcattttctcctgttagcattgtggttaatttgtctcattctgcatttgctcgatgcttgatgaaactaatacgaattggcattttgcttgaacag

upper sequence: GLYMA15G08210.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 4
GGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctattctgaagccttt-tgttt-tctgttgattataaatacatcataatta-------------ttagtttgaagcat---tcattcaactcatgtgttttatatttggaat---------------------------------------
|||||||| |||||||| |  ||||| || ||||||||||| || ||||||||||| |||||||| || |||||||||||| | |||||||| |||||||||  || | |  ||     ||  ||||  |    |||  |  | | | |||   |||               |||| |||||||   |   |     ||||| || |    |||  ||                                       
GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcag

upper sequence: GLYMA15G08210.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S253_7V6.1 (Physcomitrella patens), 5'ss of exon 3
GGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctattctgaagccttttgt-tttctgttgattataaat-acatcataattattagtttgaagcattcattcaactcatgtgttttatatttggaat------------------------------------------------------------
|| ||||||||||| ||||  ||||||||||||||||| || || || |||||||| |||||  | || |  || ||||| |  |||||| |||| |||||| ||  |||    |   ||  | | | |  || ||| ||  ||  | |||      |   | || || |  |  | |  |    ||   ||  ||||                                                                
GGGTATGTCTTCAAGATTATGGGAGGTTGCGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatataaacacagctggtatgtctgagtagatcatttatcgcgtcactgcc-tcgctgtgcagaaagcgatgagttgcgttgaagtacctttgatgcactcagtacggccgcgaggttatgattttcatctgtaacgactcttgcctgttgtcgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192326140|gb|FK016257.1|FK016257
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|13251887|gb|BG362790.1|BG362790
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTATGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|10709860|gb|BF009584.1|BF009584
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|298172139|gb|HO021731.1|HO021731
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|7684647|gb|AW755295.1|AW755295
EST:     AGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: AGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|208292822|gb|GE095610.1|GE095610
EST:     AAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: AAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|193317089|gb|FK279879.1|FK279879
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTACGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|192303339|gb|FG995633.1|FG995633
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|8826310|gb|BE210040.1|BE210040
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|6071105|gb|AW100492.1|AW100492
EST:     GTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|22525238|gb|BU084049.1|BU084049
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|213601201|gb|DB964680.1|DB964680
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|18730661|gb|BM526007.1|BM526007
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|13181588|gb|BG352928.1|BG352928
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|298193972|gb|HO040620.1|HO040620
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|192332916|gb|FK025013.1|FK025013
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATAGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|20811812|gb|BQ296290.1|BQ296290
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|4313890|gb|AI461009.1|AI461009
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|5058304|gb|AI736780.1|AI736780
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|6501870|gb|AW203229.1|AW203229
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|6566557|gb|AW234200.1|AW234200
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|193626800|gb|FK577140.1|FK577140
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTACGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|18735629|gb|BM528877.1|BM528877
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
EST: gi|193367249|gb|FK330339.1|FK330339
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCTAATTGGAGAGCGTAGGAG
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGC-AAT-GGAGAGCGTAGGAG
EST: gi|17023205|gb|BM094239.1|BM094239
EST:     GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAG                         GAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctat ... acccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgtctattctgaagccttttgttttctgttgattataaatacatcataattattagtttgaagcattcattcaactcatgtgttttatatttggaat

- - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC