1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTTAGCGAAGAAGTAGAGTGTGCTTTAGCAAAATTAGTCCCTGCCAAGCTTAGTGGGAGgtattattttgtcacctcaaagtcaatttcatgacgcatatttgtctttttttttttttttattactaacccatatttgtttgataatttgatcttatcctaatgtatttgtatctatattttatttttctaatactcaaactgaaatacag
species | Glycine max |
transcript | GLYMA15G07330.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAAGTAGAGTGTGCTTTAGCAAAATTAGTCCCTGCCAAGCTTAGTGGGAG GTCTTCTCCCAAGGGCATAGAAGGCCCTGATGACAGCAGTCTACAATTACAEST: gi|213605456|gb|DB966949.1|DB966949
genomic: GAAGTAGAGTGTGCTTTAGCAAAATTAGTCCCTGCCAAGCTTAGTGGGAGgtattatttt ... tgaaatacagGTCTTCTCCCAAGGGCATAGAAGGCCCTGATGACAGCAGTCTACAATTACA
EST: GAAGTAGAGTGTGCTTTAGCAAAATTAGTCCCTGCCAAGCTTAGTGGGAG GTCTTCTCCCAAGGGCATAGAAGGCCCTGATGACAGCAGTCTACAATTACAEST: gi|209708995|gb|BW661855.1|BW661855
genomic: GAAGTAGAGTGTGCTTTAGCAAAATTAGTCCCTGCCAAGCTTAGTGGGAGgtattatttt ... tgaaatacagGTCTTCTCCCAAGGGCATAGAAGGCCCTGATGACAGCAGTCTACAATTACA
EST: GAAGTAGAGTGTGCTTTAGCGAAATTAGTCCCTGCCAAGCTTAGTGGGAG GTCTTCTCCCAAGGGCATAGAAGGCCCTGATGACAGCAGTCTACAATTACA
genomic: GAAGTAGAGTGTGCTTTAGCAAAATTAGTCCCTGCCAAGCTTAGTGGGAGgtattatttt ... tgaaatacagGTCTTCTCCCAAGGGCATAGAAGGCCCTGATGACAGCAGTCTACAATTACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTAGCGAAGAAGTAGAGTGTGCTTTAGCAAAATTAGTCCCTGCCAAGCTTAGTGGGAGgtattattttgtcacctcaaagtcaatttcatgacgcatatttgtctttttttttttttttattactaacccatatttgtttgataatttgatcttatcctaatgtatttgtatctatattttatttttctaatactcaaactgaaatacag
- - - - - - - - - - - - - - - - - - - - - - CAAGCT