Sequence
atgc intronic sequence ATGC exonic sequenceTTCAGGATGGGGCTCAAAGTTTCCCCGGGTTGTTATGAGGGAATGCGTATTCGTGAAGCCAAAACAGAGGCCTTCACTGTTAAGGATCACCGTGGAGAATgtaagtacataaacttcattgtttatgttctatccttcttctgtaatgatacttatacttgattgcag
Basic information
species | Glycine max |
transcript | GLYMA15G07330.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G07330.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0181g00220.t01 (Vitis vinifera), 5'ss of exon 6
TTCAGGATGGGGCTCAAAGTTTCCCCGGGTTGTTATGAGGGAATGCGTATTCGTGAAGCCAAAACAGAGGCCTTCACTGTTAAGGATCACCGTGGAGAATgtaagtacataaacttcattg--tttatgttctatccttcttctgtaatgatacttatacttgattgcag----------------------------------------
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TTCAGGCTAGGGCTGAAGGTTGCCTCAGGCTATTGTGAGGGCATGCGTATTCGTGAAGCAAAAACAGATGCCTTCACTGTTAAGGATCACAGAGGGGAATgtgagttgatgttcagtgtcaaattattatttacttctttttatatatgcataaatgtgtgtatctgttgggatgatggtggtgaatctgaaagatcatttttttcccag
upper sequence: GLYMA15G07330.2 (Glycine max), 5'ss of exon 5
lower sequence: PP1S34_132V6.1 (Physcomitrella patens), 5'ss of exon 4
TTCAGGATGGGGCTCAAAGTTTCCCCGGGTTGTTATGAGGGAATGCGTATTCGTGAAGCCAAAACAGAGGCCTTCACTGTTAAGGATCACCGTGGAGAATgtaag-----tacataaacttcattgttta-tgttctatccttct-tctgtaatgatacttatacttgattgcag-------------------------
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TTTCGACTAGGCGTGAAAATCTCATCCACTTGTTCTGAGGGCGTTCGAATTCGAGAAGCTAAGACAGAGGCCTTCACTGTTAAGGATCATCGTGGTGAACgtaagatttccacatcgtctagattgtttggtgtatcttgtttctatttgtgattacgtcacagcatcatttcatatccccttccccagcgtaacggtgg
upper sequence: GLYMA15G07330.2 (Glycine max), 5'ss of exon 5
lower sequence: PP1S21_379V6.1 (Physcomitrella patens), 5'ss of exon 6
TTCAGGATGGGGCTCAAAGTTTCCCCGGGTTGTTATGAGGGAATGCGTATTCGTGAAGCCAAAACAGAGGCCTTCACTGTTAAGGATCACCGTGGAGAATgtaagtacataaacttcattgtttatgttctatcc-ttcttctgtaatgatacttatacttgattgcag---------------------------------
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TTCCGACTTGGCGTGAAAGTTGCATCTGGATTTTGTGAGGGATTGCGAATTCGAGAAGCCAAGACTGAGGCCTTTACCGTGAAGGATCACCGTGGAGAGCgtatg-attcaaacctc-tcgttcgtcttgagtagattatttcgtgacccagggtattctgttatgtgacctctttatgctttgctcgttatcgtcatgaga
upper sequence: GLYMA15G07330.2 (Glycine max), 5'ss of exon 5
lower sequence: PP1S98_167V6.1 (Physcomitrella patens), 5'ss of exon 4
TTCAGGATGGGGCTCAAAGTTTCCCCGGGTTGTTATGAGGGAATGCGTATTCGTGAAGCCAAAACAGAGGCCTTCACTGTTAAGGATCACCGTGGAGAATgtaagtacataaactt-----cattgtttat-gttctatccttcttctgtaatgatacttatacttgattgcag--------------------------
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TTTCGATTGGGCGTGAAAATTTCATCCGGTTATTGTGAGGGTCTGCGAATTCGAGAAGCTAAGACCGAGGCCTTCACTGTGAAGGATCATCGAGGAGAACgtaagattatcgcttcacatatattgtttggagtattaagtttaatttgcggtttactgcatattgacttgcatgtcctcgcccagcccaactgtagtgtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|4260437|gb|AI416933.1|AI416933EST: TCGTGAAGCCAAAACAGAGGCCTTCACTGTTAAGGATCACCGTGGAGAAT TATACAAGAAGCACTACCCACCTGCCTTGAATGATGAGGTCTGGAGACTGG
genomic: TCGTGAAGCCAAAACAGAGGCCTTCACTGTTAAGGATCACCGTGGAGAATgtaagtacat ... ttgattgcagTATACAAGAAGCACTACCCACCTGCCTTGAATGATGAGGTCTGGAGACTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCAGGATGGGGCTCAAAGTTTCCCCGGGTTGTTATGAGGGAATGCGTATTCGTGAAGCCAAAACAGAGGCCTTCACTGTTAAGGATCACCGTGGAGAATgtaagtacataaacttcattgtttatgttctatccttcttctgtaatgatacttatacttgattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA