Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACTTATAGGTGTTGGATACTTGGATTACCAGTTTGGACTCTTGCAACCCTATGTAGTGAATTTTCTTTTAATTTCTGGTCCATTTCGATCTGTCGCATgtaagtggtctatttatttttcaagttaagcaattttggttgtgcagttaaacagcagtacaaaatataataattttcttatttttcatatcctttcaacattctctataggctagtcggtgttggtgag

Basic information

species Glycine max
transcript GLYMA15G06660.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G06660.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv00s0282g00040.t01 (Vitis vinifera), 5'ss of exon 1
AGACTTATAGGTGTTGGATACTTGGATTACCAGTTTGGACTCTTGCAACCCTATGTAGTGAATTTTCTTTTAATTTCTGGTCCATTTCGATCTGTCGCATgtaagtggtctatttatttttcaagttaagcaattttggttgtgcagttaaacagcagtacaaaatataataattttcttatttttcatatcctttcaacattctctataggctagtcggtgttggtgag
|  | | ||||        | |||||||  ||||||||||| ||||  |  |  |  |||  ||||| |||||||||||||||||| | ||||||||||||||||| | ||| ||             |  | |||    ||| || |||  |  ||  | ||  | ||    | ||    |  || | || |||| | |||||  | |||                   
ACCCATTTAGGCTAATTGGAGTTGGATTGTCAGTTTGGACTGTTGCTGCAGTTGGCTGTGGTTTTTCATTTAATTTCTGGTCCATTACAATCTGTCGCATgtaagttgcctaattgc-----------actactttaaaatgtccactta--cgacataagaatttgtatgtctgtttcagtagttaaaatgcttttatcattccttttag-------------------