Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATATAATGGACAGAGGTACTGATGCTCGGAATCTGTTACTAGGAAAAGTTATTCCTCTTCGACTTGGTTATGTAGGTGTTGTAAATCGCAGTCAGGAGgtaatcatgcttcacactgttcataagggttttttttttttcaaatacaaataaatataaacatgtaatttgcttgattggcatgaaggttaatatgtatttttatttatttattgtttcatcatattag

Basic information

species Glycine max
transcript GLYMA15G06380.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G06380.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os04g31190.1 (Oryza sativa), 5'ss of exon 4
GGATATAATGGACAGAGGTACTGATGCTCGGAATCTGTTACTAGGAAAAGTTATTCCTCTTCGACTTGGTTATGTAGGTGTTGTAAATCGCAGTCAGGAGgtaatcatgcttcacactgttcataagggttttttttttttcaaatacaaataaatataaacatgtaatttgcttgattggcatgaaggttaatatgtatttttatttatttattgtttcatcatattag
||| || |||||||| || ||||||||||| ||  | ||||| ||||| || || || ||    |||||||||||||||||||||||||| || || ||||||  | |     ||| |   ||| |   ||  ||   ||    ||     | ||| |   | |  | ||   | |  |  |||||   | |  |||| ||||                           
GGACATCATGGACAGGGGCACTGATGCTCGTAACTTTTTACTGGGAAATGTGATCCCCCTCAAGCTTGGTTATGTAGGTGTTGTAAATCGTAGCCAAGAGgta-ccttctaagacaatac-catgaaccttcattagattgactatcatcttgaatttcttcttcgagttccatagtctcacatgata-tgacaatgtttttt---------------------------

upper sequence: GLYMA15G06380.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G14120.2 (Arabidopsis thaliana), 5'ss of exon 4
GGATATAATGGACAGAGGTACTGATGCTCGGAATCTGTTACTAGGAAAAGTTATTCCTCTTCGACTTGGTTATGTAGGTGTTGTAAATCGCAGTCAGGAGgtaatcatgcttcacactgttcataagggttttttttttttcaaatacaaataaatataaacatgtaatttgcttgattggcatgaaggttaatatgtatttttatttatttattgtttcatcatattag
|||||| ||||||||||||||||||||||||||||   | || ||||||   ||||||||||||||||| || || || ||||||||||| ||||| ||||||| |      |    | |||| ||   |||     | || |  ||  | |  ||||     |||   |||    |     ||||    | |     | || || || | |  |               
GGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAGAGgtaaac------cctgtttttca-aaaaatttacgcatgtttacttatga-tgtatat-----tgtt-cttgtcctaccattatgagctgtgac---cacttctacttttgtgcttg-------------

upper sequence: GLYMA15G06380.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G33650.1 (Arabidopsis thaliana), 5'ss of exon 4
GGATATAATGGACAGAGGTACTGATGCTCGGAATCTGTTACTAGGAAAAGTTATTCCTCTTCGACTTGGTTATGTAGGTGTTGTAAATCGCAGTCAGGAGgtaatcatgcttcacactgttcataagggttttttttttttcaaatacaaataaatataaacatgtaatttgcttgattggcatgaaggttaatatgtatttttatttatttattgtttcatcatattag
|||||| ||||||| ||||||||||||||| || ||  | || ||||| ||| |||||||||||||||| || || || |||||||||||  | |||||||||| | ||        || ||| ||   ||  |||||           |||  || ||     |   ||   ||   || | |||   ||| |   |  | || | || |||||               
GGATATTATGGACAAAGGTACTGATGCTCGAAAACTCCTTCTTGGAAATGTTGTTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTTGCCAGGAGgtaaacctgtg----gttgctcacaactattgcttttt-----------aatttatttagtgtggctcttcttttatgtgacttgagctttattgc-ttctgttctgtacttattt--------------

upper sequence: GLYMA15G06380.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 4
GGATATAATGGACAGAGGTACTGATGCTCGGAATCTGTTACTAGGAAAAGTTATTCCTCTTCGACTTGGTTATGTAGGTGTTGTAAATCGCAGTCAGGAGgtaatcatgcttcacactgttcat-aagggttttttttttttcaaatacaaataaatataaacatgtaatttgcttgattggcatgaaggttaatatgtatttttatttatttattgtttcatcatattag
||| || |||||||||||||| ||||| || ||| | || || |||||||| ||||| ||||||||||||||  |||||||||| ||||| ||||| ||||||||| ||        || |  | || | |  |||| | || | | ||   |  |||| |     |  ||||   |    ||   | ||| |   ||  ||  |                          
GGACATTATGGACAGAGGTACCGATGCCCGCAATTTATTGCTTGGAAAAGTGATTCCCCTTCGACTTGGTTACATAGGTGTTGTGAATCGTAGTCAAGAGgtaatcttggaattttgtggtagtgaaagataattttctatttatacaccttttgatatga----ttggtttg---gggcagccaaagggtaaggttgagttccttg------------------------