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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCAATGGGACTGCTGCAGTGGTCCAGAATGATAGCAACCCTTTCAATTCTCACCAAACTGTATGGTCTAAGAGAGATAACAATCAAAGAACTTCAAAGgtgctaaacaaaaattgtattaccttgttgattgctggtttaaagttgtatatctaacagtttagcctgttgtccatgtcag

Basic information

species Glycine max
transcript GLYMA15G05410.5
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298196968|gb|HO041735.1|HO041735
EST:     CTCACCAAACTGTATGGTCTAAGAGAGATAACGATCAAAGAACTTCAAAG                         GCTTCTGACATTCCTACTACGGAACATGTTC
genomic: CTCACCAAACTGTATGGTCTAAGAGAGATAACAATCAAAGAACTTCAAAGgtgctaaaca ... tccatgtcagGCTTCTGACATTCCTACTACGGAACATGTTC
EST: gi|207757889|gb|GD727697.1|GD727697
EST:     CTCACCAAACTGTATGGTCTAAGAGAGATAACAATCAAAGAACTTCAAAG                         GCTTCTGACATT
genomic: CTCACCAAACTGTATGGTCTAAGAGAGATAACAATCAAAGAACTTCAAAGgtgctaaaca ... tccatgtcagGCTTCTGACATT
EST: gi|208044198|gb|GD839222.1|GD839222
EST:     CTCACCAAACTGTATGGTCTAAGAGAGATAACAATCAAAGAACTTCAAAG                         GCTTCTGACATTCCTACTACGGAACATGTTCCAAGGGTATTGCCAAAGAAC
genomic: CTCACCAAACTGTATGGTCTAAGAGAGATAACAATCAAAGAACTTCAAAGgtgctaaaca ... tccatgtcagGCTTCTGACATTCCTACTACGGAACATGTTCCAAGGGTATTGCCAAAGAAC
EST: gi|208235308|gb|GE034618.1|GE034618
EST:     CTCACCAAACTGTATGGTCTAAGAGAGATAACAATCAAAGAACTTCAAAG                         GCTTCTGACATTCCTACTACGGAACATGTTCCAAGGGTATTGCCAAAGAAC
genomic: CTCACCAAACTGTATGGTCTAAGAGAGATAACAATCAAAGAACTTCAAAGgtgctaaaca ... tccatgtcagGCTTCTGACATTCCTACTACGGAACATGTTCCAAGGGTATTGCCAAAGAAC
EST: gi|213590293|gb|DB963856.1|DB963856
EST:     CTCACCAAACTGTATGGTCTAAGAGAGATAACAATCAAAGAACTTCAAAG                         GCTTCTGACATTCCTACTACGGAACATGTTCCAAGGGTATTGC
genomic: CTCACCAAACTGTATGGTCTAAGAGAGATAACAATCAAAGAACTTCAAAGgtgctaaaca ... tccatgtcagGCTTCTGACATTCCTACTACGGAACATGTTCCAAGGGTATTGC
EST: gi|208123002|gb|GD923232.1|GD923232
EST:     CTCACCAAACTGTATGGTCTAAGAGAGATAACAATCAAAGAACTTCAAAG                         GCTTCTGACATTCCTACTACGGAACATGTTCCAAGGGTATTGCCAAAGAAC
genomic: CTCACCAAACTGTATGGTCTAAGAGAGATAACAATCAAAGAACTTCAAAGgtgctaaaca ... tccatgtcagGCTTCTGACATTCCTACTACGGAACATGTTCCAAGGGTATTGCCAAAGAAC
EST: gi|254317253|gb|GR826198.1|GR826198
EST:     CTCACCAAACTGTATGGTCTAAGAGAGATAACAATCAAAGAACTTCAAAG                         GCTTCTGACATTCCTACTACGGAACATGTTCCAAGGGTATTGCCAAAGAAC
genomic: CTCACCAAACTGTATGGTCTAAGAGAGATAACAATCAAAGAACTTCAAAGgtgctaaaca ... tccatgtcagGCTTCTGACATTCCTACTACGGAACATGTTCCAAGGGTATTGCCAAAGAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTCAATGGGACTGCTGCAGTGGTCCAGAATGATAGCAACCCTTTCAATTCTCACCAAACTGTATGGTCTAAGAGAGATAACAATCAAAGAACTTCAAAGgtgctaaacaaaaattgtattaccttgttgattgctggtttaaagttgtatatctaacagtttagcctgttgtccatgtcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC