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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAAAGTGCTTGGATCATCACTGCATTCTGGGACATTCTAGCATTTGCATTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgtattacctagtgagataaggcttttgttgttgttgtaacatgacatttcattcccaacatttatcattggttatatttctattttaaagtgg...

Basic information

species Glycine max
transcript GLYMA15G05370.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05370.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os11g34360.1 (Oryza sativa), 5'ss of exon 4
GGCAAAGTGCTTGGATCATCACTGCATTCTGGGACATTCTAGCATTTGCATTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgtattacctagtgagataaggcttttgttgttgttgtaacatgacatttcattcccaacatttatcattggttatatttctattttaaagtgg-
|||| || || |||||||| ||||||||||||||| |||| |||||||  || ||   ||| || || ||||| ||||| |||||||| ||||| ||||||| || | | || |||  | |   |  |    ||   | ||   |  |  |   |   ||   |  | ||   | |   | | || ||| ||  ||     
GGCAGAGCGCATGGATCATAACTGCATTCTGGGACGTTCTTGCATTTGTTTTGCTTCTTGTGATTTGTTATCTATGGGCGCCATCCCAGAGCTCACAAAGgttaaatct-ttgcctcttcaatgactggaaatgccatagtgaaagtagtagtgtagcttgaaatgacttgaaagtatctgtgttgctacttgtaataacc

upper sequence: GLYMA15G05370.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv12s0034g01090.t01 (Vitis vinifera), 5'ss of exon 4
GGCAAAGTGCTTGGATCATCACTGCATTCTGGGACATTCTAGCATTTGCATTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgtattacctagtgagataaggcttttgttgttgttgtaacatgacatttcattcccaacatttatcat-tggttatat-ttctattttaaagtgg-----
|||| |||||||||||||| ||||| || ||||||||||| || |||| ||| |||||||| || |||||||||||||| ||||| || ||||| ||| ||||  ||  ||| |        ||||   |  | | ||  | |  |  |     || | |   |||   ||  || |   |  || || |   | | | | |     
GGCAGAGTGCTTGGATCATTACTGCTTTTTGGGACATTCTTGCTTTTGGATTGCTCTGTGTCATCTGCTATCTCTGGGCTCCATCTCAGAGCTCCCAACGgtgcgttaaatttct-------ataaatttcatatggtcatagggaggttcttcttaactgtaaactactaaaatataaatccatgttttgggtcatattagtcatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58016452|gb|CX703194.1|CX703194
EST:     TTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAG                         GTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
genomic: TTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... cgatgtatagGTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
EST: gi|26269350|gb|CA820413.1|CA820413
EST:     TTACTCTGTGTTATATGTTATCTCTGGGCCCCATCCCAAAGCTCTCAAAG                         GTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
genomic: TTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... cgatgtatagGTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
EST: gi|58018482|gb|CX705224.1|CX705224
EST:     TTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAG                         GTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
genomic: TTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... cgatgtatagGTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
EST: gi|58019533|gb|CX706275.1|CX706275
EST:     TTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAG                         GTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
genomic: TTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... cgatgtatagGTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
EST: gi|31310326|gb|CD395529.1|CD395529
EST:     TTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAG                         GTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
genomic: TTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... cgatgtatagGTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
EST: gi|51336251|gb|CO980117.1|CO980117
EST:     TTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAG                         GTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
genomic: TTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... cgatgtatagGTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
EST: gi|9439998|gb|BE440509.1|BE440509
EST:     TTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAG                         GTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
genomic: TTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... cgatgtatagGTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
EST: gi|209723096|gb|BW662472.1|BW662472
EST:     TTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAG                         GTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA
genomic: TTACTCTGTGTTATATGCTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGgtgaattgta ... cgatgtatagGTATGCATATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCA