Sequence
atgc intronic sequence ATGC exonic sequenceGTGTTATAGGTGGATCTCAAAGAGGGTCCTTTAGAGCAATTCACTCATGAGATGGAACCCTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGgtactctattgcattgttttataacactagtttaaactcacctgccaaaagcggacaagcatcattggtgcttccaatatttacag
Basic information
species | Glycine max |
transcript | GLYMA15G05360.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G05360.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv12s0034g01000.t01 (Vitis vinifera), 5'ss of exon 6
GTGTTATAGGTGGATCTCAAAGAGGGTCCTTTAGAGCAATTCACTCATGAGATGGAACCCTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGgtactctattgcattgttttataacactagtttaaactcacctgccaaaagc--ggacaagcatcattggtgcttccaatatttacag
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---------GTGGAGCTTAAAGAAGGTCCTCTTGATCAGTTCACACATGAGATGGAACCCTTCCTACGCAAGCAAGGGATGCCGGTTCGGTTGAACAAAGgtgcatttttgc-ttaattcattttgctcgcct---tttacctgtgaaaagccagacttaacattctttatttcttcatgctatgcag
upper sequence: GLYMA15G05360.2 (Glycine max), 5'ss of exon 4
lower sequence: PP1S431_4V6.1 (Physcomitrella patens), 5'ss of exon 5
GTGTTATAGGTGGATCTCAAAGAGGGTCCTTTAGAGCAATTCACTCATGAGATGGAACCCTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGgtactctattgcattgttttataacactagtttaaactcacctgccaaaagcggacaagcatcat----tggtgctt----ccaatatttacag---------
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---------GTGGACCTTAAAGAAGGACCATTAGATCAATTCACTCATGACATGGAACCTTTTCTTCGCAAGCAAGGCATGCCTGTTCGGCTAAATAGAGgcatgttcttcttcctgttcttgtccgtaatc---attttcctcaaagagctggatacttgctgtatcttgatgctggaaaccggtcctctaggatgaaactgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58019534|gb|CX706276.1|CX706276EST: GATGGAACCCTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAG GAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGCGACGAAGGAAAGCCTT
genomic: GATGGAACCCTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGgtactctatt ... atatttacagGAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGCGACGAAGGAAAGCCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGTTATAGGTGGATCTCAAAGAGGGTCCTTTAGAGCAATTCACTCATGAGATGGAACCCTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGgtactctattgcattgttttataacactagtttaaactcacctgccaaaagcggacaagcatcattggtgcttccaatatttacag
- - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG