1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCATGGCAATATTCATCATTGAGCGGATTGATGAGAGGAAGGGAACGGTTTCTATTATACCTCTAGTTTTGGCGGGTATAATAAGCATTGTGTATTGGAGgcaagcccactgtttctttcgttttgcatttttcttcaacggaattccattttttatggataataacaaagaactacttgtgaattctgcaaatatattt...
species | Glycine max |
transcript | GLYMA15G05100.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CGGGTATAATAAGCATTGTGTATTGGAG ATTCTTTGATGACCTGCGTCCATATGCTCTAGTCCAATTTGTGCCATGCATEST: gi|26045603|gb|CA783140.1|CA783140
genomic: CGGGTATAATAAGCATTGTGTATTGGAGgcaagcccac ... ttgcccccagATTCTTTGATGACCTGCGTCCATATGCTCTAGTCCAATTTGTGCCATGCAT
EST: TCTATTATACCTCTAGTTTTGGCGGGTATAATAAGCATTGTGTATTGGAG ATTCTTTGATGACCTGCGTCCATATGCTCTAGTCCAATTTGTGCCATGCATEST: gi|298193280|gb|HO033714.1|HO033714
genomic: TCTATTATACCTCTAGTTTTGGCGGGTATAATAAGCATTGTGTATTGGAGgcaagcccac ... ttgcccccagATTCTTTGATGACCTGCGTCCATATGCTCTAGTCCAATTTGTGCCATGCAT
EST: TCTATTATACCTCTAGTTTTGGCGGGTATAGTAAGCATTGTGTATTGGAG ATTCTTTGATGACCTGCGTCCATATGCTEST: gi|9898820|gb|BE607788.1|BE607788
genomic: TCTATTATACCTCTAGTTTTGGCGGGTATAATAAGCATTGTGTATTGGAGgcaagcccac ... ttgcccccagATTCTTTGATGACCTGCGTCCATATGCT
EST: TCTATTATACCTCTAGTTTTGGCGGGTATAATAAGCATTGTGTATTGGAG ATTCTTTGATGACCTGCGTCCATATGCTCTAGTCCAATTTGTGCCATGCAT
genomic: TCTATTATACCTCTAGTTTTGGCGGGTATAATAAGCATTGTGTATTGGAGgcaagcccac ... ttgcccccagATTCTTTGATGACCTGCGTCCATATGCTCTAGTCCAATTTGTGCCATGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATGGCAATATTCATCATTGAGCGGATTGATGAGAGGAAGGGAACGGTTTCTATTATACCTCTAGTTTTGGCGGGTATAATAAGCATTGTGTATTGGAGgcaagcccactgtttctttcgttttgcatttttcttcaacggaattccattttttatggataataacaaagaactacttgtgaattctgcaaatatattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG