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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTTTGCCGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAGCCAACACTTACTCCCACTTCTGATGTGAAGGGCAGAAAGgttttaacgaacttgttcttacaaataactgctacctctgtattgttgcttttgcaaagtggcattggagctgctatgtataatatctacatagatataaatttttgatagacgtaatgacatgtttgaaattag

Basic information

species Glycine max
transcript GLYMA15G03820.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G03820.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0004g01860.t01 (Vitis vinifera), 5'ss of exon 4
TTTTTTGCCGGGGTAATATTCTTTGCTGTTGTTGCCAGTTTTATCCCAGAGCCAACACTTACTCCCACTTCTGATGTGAAGGGCAGAAAGgttttaacgaact--tgttcttacaaataactgctacctctgtattgttgcttttgcaaagtggcattggagctgctatgtataatatctacatag-atataaatttttgatagacgtaatgac--atgtttgaaattag
|| ||||| || ||  | |||||||||||||| |   ||||||||||||||||||||||| |||||| ||| ||||||||    |  ||||||   | || ||  | | |  | |||       |  ||   |||  |||| | || | |  | ||||||   | || |  ||||| |   |  || || ||||  || | | ||  |  ||    ||| | || |  ||
TTCTTTGCGGGTGTCGTTTTCTTTGCTGTTGTGGTTGGTTTTATCCCAGAGCCAACACTTGCTCCCAGTTCAGATGTGAAAAATAAGAAGgttcggatgatctattctcccaataaagggacattcactaattatgcttgcatatgtatatcgacattggg--tact-tccataatttgggccaagtatctaaaggttagttgga-atggtgcttgatgctggagaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193499614|gb|FK460401.1|FK460401
EST:     TTATCCCAGAGCCAACACTTACTCCCACTTCTGATGTGAAGGGCAGAAAG                         AAAAATGGGGATGAAGGAGACAAGGATATTATGAAAAAGCATCGTCGGCAA
genomic: TTATCCCAGAGCCAACACTTACTCCCACTTCTGATGTGAAGGGCAGAAAGgttttaacga ... ttgaaattagAAAAATGGGGATGAAGGAGACAAGGATATTATGAAAAAGCATCGTCGGCAA
EST: gi|213593225|gb|DB973530.1|DB973530
EST:     TTATCCCAGAGCCAACACTTACTCCCACTTCTGATGTGAAGGGCAGAAAG                         AAAAATGGGGATGAAGGAGACAAGGATATTATGAAAAAGCATCGTCGGCAA
genomic: TTATCCCAGAGCCAACACTTACTCCCACTTCTGATGTGAAGGGCAGAAAGgttttaacga ... ttgaaattagAAAAATGGGGATGAAGGAGACAAGGATATTATGAAAAAGCATCGTCGGCAA