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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTTACGAGGACAGAAATCTGGCACAGAATTTGTCAGCAAGCCCCTTTCAAAGATTTTAATTATACCTGCCAAAGACCTTGTCCAAGTTACAGCACAGgtttgctacttttcaactatatgcaatttgcgaagtactttggaattttgtagttacctaagctaaatatttgcaatcttgtgtgagttttgttttgttt...

Basic information

species Glycine max
transcript GLYMA15G03190.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G03190.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0002g01560.t01 (Vitis vinifera), 5'ss of exon 4
TTCTTTACGAGGACAGAAATCTGGCACAGAATTTGTCAGCAAGCCCCTTTCAAAGATTTTAATTATACCTGCCAAAGACCTTGTCCAAGTTACAGCACAGgtt-tgctacttttcaactatatgcaatttgcgaagtactttggaattttgtagttacctaagctaaatatttgcaatcttgtgtgagttttgttttgttt-
| || | || ||||||||  ||    |||| | |||||||||| | | |||||||||||||||||||||||| ||||| ||||| ||||||| |||| ||||| |||||  |||  || || |     ||  |   |||| || |||    ||      |   |    | |||  |  |       || | | ||     | 
TCCTGTCCGTGGACAGAAGGCTATTTCAGATTCTGTCAGCAAGGCTCCTTCAAAGATTTTAATTATACCTGCTAAAGAACTTGTTCAAGTTATAGCAAAGgttgtgctatatttatac-atttcttcattctggtatactctg-aatcaaataaggttttttcccttctttttataggcaaacaaaagatatattaaaagtg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192323551|gb|FK019022.1|FK019022
EST:     CAA-GATTTTAATTATACCTGCCAAAGACCTTGTCCAAGTTACAGCACAG                         GATGTTGCTATTACCAGGGATGGCTTAGCTAATGAGTATCACCATGATATG
genomic: CAAAGATTTTAATTATACCTGCCAAAGACCTTGTCCAAGTTACAGCACAGgtttgctact ... atcatggcagGATGTTGCTATTACCAGGGATGGCTTAGCTAATGAGTATCACCATGATATG
EST: gi|11413014|gb|BF425034.1|BF425034
EST:     CAAAGATTTTA-TTATACCTGCCAAAGACCTTGTCCAAGGTACAGCACAG                         GATGTTGCTATTACC
genomic: CAAAGATTTTAATTATACCTGCCAAAGACCTTGTCCAAGTTACAGCACAGgtttgctact ... atcatggcagGATGTTGCTATTACC