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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATATTTGAAGTTGTTACTGGTGAAGCAAAGAAACAAGTTAAAGAGAAGTCTTCGGTTTCAAACAACAGTGGCAACAAATCTAAGTCTAACTCTCAAGCGgtaaacaatattttcccccccacgctcatacatgacaaataaatacagttgttcataaatacttatctatctgagctgcagtgaaaaacatcaagatgtt...

Basic information

species Glycine max
transcript GLYMA15G03160.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208029128|gb|GD830610.1|GD830610
EST:     CTTCGGTTTCAAACAACAGTGGCAACAAATCTAAGTCTAACTCTCAAGCG                         GCTTCCGAAGCCCAGG
genomic: CTTCGGTTTCAAACAACAGTGGCAACAAATCTAAGTCTAACTCTCAAGCGgtaaacaata ... ggagcagcagGCTTCCGAAACCCAGG
EST: gi|254328382|gb|GR835347.1|GR835347
EST:     CTTCGGTTTCAAACAACAGTGGCAACAAATCTAAGTCTAACTCTCAAGCGCAG                       
genomic: CTTCGGTTTCAAACAACAGTGGCAACAAATCTAAGTCTAACTCTCAA--GC-Ggtaaacaata ... ggagcagc
EST: gi|193386225|gb|FK349431.1|FK349431
EST:     CTTCGGTTTCAAACAACAGTGGCAACAAATCTAAGTCTAACTCTCAAGCGCAG                       
genomic: CTTCGGTTTCAAACAACAGTGGCAACAAATCTAAGTCTAACTCTCAA--GC-Ggtaaacaata ... ggagcagc
EST: gi|151403173|gb|EV272983.1|EV272983
EST:     CTTCGGTTTCAAACAACAGTGGCAACAAATCTAAGTCTAACTCTCAAGCG                         GCTTCCGAAACCCAGGGCAGACAGTCAAAGGCATTACAAACAAAAGATGAG
genomic: CTTCGGTTTCAAACAACAGTGGCAACAAATCTAAGTCTAACTCTCAAGCGgtaaacaata ... ggagcagcagGCTTCCGAAACCCAGGGCAGACAGTCAAAGGCATTACAAACAAAAGATGAG
EST: gi|209711281|gb|BW676479.1|BW676479
EST:     CTTCGGTTTCAAACAACAGTGGCAACAAATCTAAGTCTAACTCTCAAGCG                         C
genomic: CTTCGGTTTCAAACAACAGTGGCAACAAATCTAAGTCTAACTCTCAAGCGgtaaacaata ... ggagcagcag-
EST: gi|209711281|gb|BW676479.1|BW676479
EST:     CTTCGGTTTCAAACAACAGTGGCAACAAATCTAAGTCTAACTCTCAAGCG                         C
genomic: CTTCGGTTTCAAACAACAGTGGCAACAAATCTAAGTCTAACTCTCAAGCGgtaaacaata ... ggagcagcag-
EST: gi|209711281|gb|BW676479.1|BW676479
EST:     CTTCGGTTTCAAACAACAGTGGCAACAAATCTAAGTCTAACTCTCAAGCG                         C
genomic: CTTCGGTTTCAAACAACAGTGGCAACAAATCTAAGTCTAACTCTCAAGCGgtaaacaata ... ggagcagcag-
EST: gi|207817935|gb|GD789798.1|GD789798
EST:     TGGCAACAAATCTAAGTCTAACTCTCAAGCGCAG                       
genomic: TGGCAACAAATCTAAGTCTAACTCTCAA--GC-Ggtaaacaata ... ggagcagc

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATATTTGAAGTTGTTACTGGTGAAGCAAAGAAACAAGTTAAAGAGAAGTCTTCGGTTTCAAACAACAGTGGCAACAAATCTAAGTCTAACTCTCAAGCGgtaaacaatattttcccccccacgctcatacatgacaaataaatacagttgttcataaatacttatctatctgagctgcagtgaaaaacatcaagatgtt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaca