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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGTTGGAAAAAGTGAAAGAACTTGTATCTGAGCCTTTAATTAGTCGTTATGGTAACGATGAAGGTATTCCTGAACTCAGAGCAGCATTAGTCAAAAAGgtaaatggtataatttcttcttacaagatgtactagtgggaatttggaaactctagttatctgtttgaagttcgtcatctgaacggagcttggggatttc...

Basic information

species Glycine max
transcript GLYMA15G01520.3
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8282976|gb|BE020537.1|BE020537
EST:     ATGGTAACGATGAAGGTATTCCTGAACTCAGAGCAGCATTTGTCAAAAAG                         TTGCGTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACATCAGGT
genomic: ATGGTAACGATGAAGGTATTCCTGAACTCAGAGCAGCATTAGTCAAAAAGgtaaatggta ... cttcgtgtagTTGCGTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACATCAGGT
EST: gi|19938456|gb|BQ081728.1|BQ081728
EST:     ATGGTAACGATGAAGGTATTCCTGAACTCAGAGCAGCATTAGTCAAAAAG                         TTGCGTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACATCAGGT
genomic: ATGGTAACGATGAAGGTATTCCTGAACTCAGAGCAGCATTAGTCAAAAAGgtaaatggta ... cttcgtgtagTTGCGTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACATCAGGT
EST: gi|17402144|gb|BM178926.1|BM178926
EST:     ATGGTAACGATGAAGGTATTCCTGAACTCAGAGCAGCATTAGTCAAAAAG                         TTGCGTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACATCAGGT
genomic: ATGGTAACGATGAAGGTATTCCTGAACTCAGAGCAGCATTAGTCAAAAAGgtaaatggta ... cttcgtgtagTTGCGTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACATCAGGT
EST: gi|298180177|gb|HO025392.1|HO025392
EST:     ATGGTAACGATGAAGGTATTCCTGAACTCAGAGCAGCATTAGTCAAAAAG                         TTGCGTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACATCAGGT
genomic: ATGGTAACGATGAAGGTATTCCTGAACTCAGAGCAGCATTAGTCAAAAAGgtaaatggta ... cttcgtgtagTTGCGTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACATCAGGT
EST: gi|193602566|gb|FK556701.1|FK556701
EST:     GGTAACGATGAAGGTATTCCTGAACTCAGAGCAGCATTAGTCAAAAAG                         TTGCGTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACATCAGGT
genomic: GGTAACGATGAAGGTATTCCTGAACTCAGAGCAGCATTAGTCAAAAAGgtaaatggta ... cttcgtgtagTTGCGTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACATCAGGT
EST: gi|4313781|gb|AI460900.1|AI460900
EST:     AGAGCAGCATTAGTCAAAAAG                         TTGCGTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACATCAGGT
genomic: AGAGCAGCATTAGTCAAAAAGgtaaatggta ... cttcgtgtagTTGCGTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACATCAGGT
EST: gi|37995957|gb|CF807546.1|CF807546
EST:     ATGGTAACGATGAAGGTATTCCTGAACTCAGAGCAGCATTAGTCAAAAAG                         TTGCGTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACATCAGGT
genomic: ATGGTAACGATGAAGGTATTCCTGAACTCAGAGCAGCATTAGTCAAAAAGgtaaatggta ... cttcgtgtagTTGCGTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACATCAGGT
EST: gi|14999981|gb|BI320795.1|BI320795
EST:     ATGGTAACGATGAAGGTATTCCTGAACTCAGAGCAGCATTAGTCAAAAAG                         TTGCGTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACATCAGGT
genomic: ATGGTAACGATGAAGGTATTCCTGAACTCAGAGCAGCATTAGTCAAAAAGgtaaatggta ... cttcgtgtagTTGCGTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACATCAGGT
EST: gi|16995918|gb|BM085290.1|BM085290
EST:     ATGGTAACGATGAAGGTATTCCTGAACTCAGAGCAGCATTAGTCAAAAAG                         TTGCGTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACATCAGGT
genomic: ATGGTAACGATGAAGGTATTCCTGAACTCAGAGCAGCATTAGTCAAAAAGgtaaatggta ... cttcgtgtagTTGCGTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACATCAGGT
EST: gi|151399034|gb|EV268905.1|EV268905
EST:     ATGGTAACGATGAAGGTATTCCTGAACTCAGAGCAGCATTAGTCAAAAAG                         TTGCGTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACATCAGGT
genomic: ATGGTAACGATGAAGGTATTCCTGAACTCAGAGCAGCATTAGTCAAAAAGgtaaatggta ... cttcgtgtagTTGCGTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACATCAGGT
EST: gi|37994420|gb|CF806166.1|CF806166
EST:     ATGGTAACGATGAAGGTATTCCTGAACTCAGAGCAGCATTAGTCAAAAAG                         TTGCGTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACATCAGGT
genomic: ATGGTAACGATGAAGGTATTCCTGAACTCAGAGCAGCATTAGTCAAAAAGgtaaatggta ... cttcgtgtagTTGCGTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACATCAGGT
EST: gi|193649030|gb|FK600185.1|FK600185
EST:     CATTAGTCAAAAAG                         TTGCGTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACATCAGGT
genomic: CATTAGTCAAAAAGgtaaatggta ... cttcgtgtagTTGCGTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACATCAGGT
EST: gi|193653004|gb|FK598680.1|FK598680
EST:     CAGCATTAGTCAAAAAG                         TTGCGTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACATCAGGT
genomic: CAGCATTAGTCAAAAAGgtaaatggta ... cttcgtgtagTTGCGTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACATCAGGT
EST: gi|298191489|gb|HO038968.1|HO038968
EST:     ATGGTAACGATGAAGGTATTCCTGAACTCAGAGCAGCATTAGTCAAAAAG                         TTGCGTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACATCAGGT
genomic: ATGGTAACGATGAAGGTATTCCTGAACTCAGAGCAGCATTAGTCAAAAAGgtaaatggta ... cttcgtgtagTTGCGTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACATCAGGT
EST: gi|8284765|gb|BE022324.1|BE022324
EST:     ATGGTAACGATGAAGGTATTCCTGAACTCAGAGCAGCATTAGTCAAAAAG                         TTGCGTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACATCAGGT
genomic: ATGGTAACGATGAAGGTATTCCTGAACTCAGAGCAGCATTAGTCAAAAAGgtaaatggta ... cttcgtgtagTTGCGTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACATCAGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCGTTGGAAAAAGTGAAAGAACTTGTATCTGAGCCTTTAATTAGTCGTTATGGTAACGATGAAGGTATTCCTGAACTCAGAGCAGCATTAGTCAAAAAGgtaaatggtataatttcttcttacaagatgtactagtgggaatttggaaactctagttatctgtttgaagttcgtcatctgaacggagcttggggatttc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG