1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCGgtaagtgttccttgtctttctttacgaatctgtgtgcaagccttttcttaatctgatgaaaaacaccagaagttgattatattgtgtggttaaaaccccctttttctgcag
species | Glycine max |
transcript | GLYMA15G01360.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCG AAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAGEST: gi|254322314|gb|GR837728.1|GR837728
genomic: TAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCGgtaagtgttc ... ttttctgcagAAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAG
EST: TAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCG AAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAGEST: gi|7589397|gb|AW705172.1|AW705172
genomic: TAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCGgtaagtgttc ... ttttctgcagAAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAG
EST: TAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCG AAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAGEST: gi|10253522|gb|BE821288.1|BE821288
genomic: TAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCGgtaagtgttc ... ttttctgcagAAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAG
EST: TAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCG AAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAGEST: gi|192320916|gb|FK013110.1|FK013110
genomic: TAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCGgtaagtgttc ... ttttctgcagAAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAG
EST: TAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCGGGAGATGAAGGCG AAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAGEST: gi|192333618|gb|FK025435.1|FK025435
genomic: TAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCGgtaagtgttc ... ttttctgcagAAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAG
EST: TAAATCTTACTTTGACAGAAGGATAGTTGGGTGCCCAGGAGATGAAGGCG AAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAGEST: gi|6071202|gb|AW100589.1|AW100589
genomic: TAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCGgtaagtgttc ... ttttctgcagAAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAG
EST: CAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCG AAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAGEST: gi|298195945|gb|HO044336.1|HO044336
genomic: CAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCGgtaagtgttc ... ttttctgcagAAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAG
EST: TAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATAAAGGCG AAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAEST: gi|21677694|gb|BQ630045.1|BQ630045
genomic: TAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCGgtaagtgttc ... ttttctgcagAAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAA
EST: TAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCG AAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAGEST: gi|254322313|gb|GR837727.1|GR837727
genomic: TAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCGgtaagtgttc ... ttttctgcagAAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAG
EST: TAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCG AAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAGEST: gi|33388406|gb|CA851613.1|CA851613
genomic: TAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCGgtaagtgttc ... ttttctgcagAAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAG
EST: TAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCG AAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAGEST: gi|15814678|gb|BI786953.1|BI786953
genomic: TAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCGgtaagtgttc ... ttttctgcagAAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAG
EST: TAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCG AAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAGEST: gi|192333647|gb|FK025436.1|FK025436
genomic: TAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCGgtaagtgttc ... ttttctgcagAAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAG
EST: TAAATCTTACTTTGACAGAAGGATAGTTGGGTGCCCAGGAGATGAAGGCG AAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAGEST: gi|14991330|gb|BI317003.1|BI317003
genomic: TAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCGgtaagtgttc ... ttttctgcagAAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAG
EST: TAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCG AAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAGEST: gi|5677887|gb|AI939017.1|AI939017
genomic: TAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCGgtaagtgttc ... ttttctgcagAAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAG
EST: TAAATCTTACTTTGACAGAAGGATAGATGGATGCCCAGGAGATGAAGGCG AAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAG
genomic: TAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCGgtaagtgttc ... ttttctgcagAAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCGgtaagtgttccttgtctttctttacgaatctgtgtgcaagccttttcttaatctgatgaaaaacaccagaagttgattatattgtgtggttaaaaccccctttttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG