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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAATGCGTTAAAAAACTTGGGGCTGAATGTTGTTAAGGCAAATGTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtactatcatatgtgccagtaataataaaattgatgaactgaattgaactacaataaaattgaactgacctgtaaaagtgattcggatgaactgaa...

Basic information

species Glycine max
transcript GLYMA15G00560.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G00560.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G120579_T01 (Zea mays), 5'ss of exon 4
ATGAATGCGTTAAAAAACTTGGGGCTGAATGTTGTTAAGGCAAATGTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagta-----------ctatcatatgt-gccagtaataataaaattgatgaactgaattgaactacaataaaattgaact--gacctgtaaaagtgattcggatgaactgaa----------------------------------------------------------
|||| |||| |||| ||||||||||| ||||||||||| || | ||||| ||| |||||| |||||||||| | ||||||| | || || | |||||||||            |||| |||| |   |||   |   ||| ||||      |||  |  ||   ||||  |    ||   || |||| ||  || |  ||     |                                                             
ATGAGTGCGCTAAAGAACTTGGGGCTAAATGTTGTTAAAGCTAGTGTCTGTCTCGATTCTACTGGCAAGCATATCAAGTTTGCTATAACTAGAGCgtaagtgaatcttcttttctataatatttcatcagatgtgtaaaacttgacatgacgaa--gctctcatataagttcagtctcctacttgtacaacagaatatgacatcttctttgtactttcctgcatctatcagttcttccctagaatgagtgacaggaatgctctacag

upper sequence: GLYMA15G00560.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G16880.2 (Arabidopsis thaliana), 5'ss of exon 4
ATGAATGCGTTAAAAAACTTGGGGCTGAATGTTGTTAAGGCAAATGTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtactatcatatgtgccagtaataat--aaaattgatgaactgaattga--actacaataaaattgaactgac-----ctgtaaaagtgattcggatgaactgaa--------------------------------
||||||||| | |||||||||||  ||||||| || ||||||||||| |  || |||||||| |||||||||||||| ||| |||| || | |||||| ||  | ||||||   | |  | || |   |  |  | ||   |  | ||    ||   |    |||||  ||      |||| |||  | |     |  | |||                                 
ATGAATGCGCTCAAAAACTTGGGATTGAATGTCGTCAAGGCAAATGTTTACCTTGATTCTTCCGGCAAGCACAACAAATTTGCCATTACTAGAGCgtatgtcttttcatatcatcaaagagtattttgagctccaagagtcgtttagatagttaatgttgctttgaatcgattgactctgtcaaatagttgactttagattgagttttgagctgactgtaattgttgttacaacag

upper sequence: GLYMA15G00560.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0018g01780.t01 (Vitis vinifera), 5'ss of exon 4
ATGAATGCGTTAAAAAACTTGGGGCTGAATGTTGTTAAGGCAAATGTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtac-tatcatatgtgccagtaataataaaa-ttgatgaactgaattgaactacaataaaattgaactgacctgtaaaagtgattcggatgaactgaa
||||||||  | |||||  | ||||||||||||||||| |||||||||||| | |||||||| || ||||||||||  ||| ||||||| ||||||||||| | |    ||      ||    | |     || |    |   ||  | | |   |    ||  | |   |  |   | ||||       || |   
ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTTTTGGATTCTTCGGGAAAGCACAACACATTTGCCATCACCAAAGCgtaagtccgtggagtagaatttagatgcatttttgcttcaattcccatatctatcaattcttttctttcattccaccttgttactgatatctcccaattt--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13180962|gb|BG352302.1|BG352302
EST:     GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
genomic: GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
EST: gi|192321695|gb|FK014039.1|FK014039
EST:     GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
genomic: GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
EST: gi|120529813|gb|EH257947.1|EH257947
EST:     GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
genomic: GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
EST: gi|22522966|gb|BU081777.1|BU081777
EST:     GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
genomic: GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
EST: gi|21993858|gb|BQ785386.1|BQ785386
EST:     GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGT
genomic: GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGT
EST: gi|31561420|gb|CD487258.1|CD487258
EST:     TCTTTCTAGATTCTTCTGGGAGAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
genomic: TCTTTCTAGATTCTTCTGGCA-AGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
EST: gi|213604289|gb|DB970577.1|DB970577
EST:     GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
genomic: GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
EST: gi|120491081|gb|EH219248.1|EH219248
EST:     GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
genomic: GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
EST: gi|7685965|gb|AW756613.1|AW756613
EST:     GTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
genomic: GTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
EST: gi|120494269|gb|EH222436.1|EH222436
EST:     GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
genomic: GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
EST: gi|22525030|gb|BU083841.1|BU083841
EST:     GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
genomic: GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
EST: gi|213605246|gb|DB966862.1|DB966862
EST:     GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
genomic: GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
EST: gi|18734777|gb|BM528381.1|BM528381
EST:     GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
genomic: GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
EST: gi|120534006|gb|EH262139.1|EH262139
EST:     GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
genomic: GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
EST: gi|8670493|gb|BE191600.1|BE191600
EST:     GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
genomic: GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
EST: gi|120531918|gb|EH260051.1|EH260051
EST:     GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
genomic: GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
EST: gi|14999665|gb|BI320487.1|BI320487
EST:     GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTA
genomic: GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTA
EST: gi|17519613|gb|BM188655.1|BM188655
EST:     GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
genomic: GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
EST: gi|120530189|gb|EH258323.1|EH258323
EST:     GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
genomic: GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
EST: gi|120531854|gb|EH259987.1|EH259987
EST:     GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
genomic: GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
EST: gi|10233251|gb|BE802139.1|BE802139
EST:     GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
genomic: GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
EST: gi|22525094|gb|BU083905.1|BU083905
EST:     GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
genomic: GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
EST: gi|13125321|gb|BG315891.1|BG315891
EST:     GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
genomic: GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
EST: gi|120497144|gb|EH225311.1|EH225311
EST:     GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
genomic: GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
EST: gi|20813196|gb|BQ297674.1|BQ297674
EST:     GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
genomic: GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
EST: gi|22522210|gb|BU081021.1|BU081021
EST:     GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
genomic: GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
EST: gi|7925937|gb|AW831963.1|AW831963
EST:     GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
genomic: GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
EST: gi|6134645|gb|AW133038.1|AW133038
EST:     GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAA
genomic: GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAA
EST: gi|12690942|gb|BG157278.1|BG157278
EST:     GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
genomic: GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
EST: gi|120491074|gb|EH219241.1|EH219241
EST:     GGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
genomic: GGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
EST: gi|120531768|gb|EH259901.1|EH259901
EST:     GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
genomic: GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
EST: gi|209697454|gb|BW669954.1|BW669954
EST:     GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
genomic: GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCCGGAGTTGTTAGAGGCAATCCGTTT
EST: gi|192320913|gb|FK013107.1|FK013107
EST:     GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGC                         TGATTCTGGAAGAAAAGTGGAAGATCCCGGAGTTGTTAGAGGCAATCCGTT
genomic: GTCTTTCTAGATTCTTCTGGCAAGCACAACAAGTTTTCCATCACAAAAGCgtaagtacta ... tcgtttgcagTGATTCTGGAAGAAAAGTGGAAGATCC-GGAGTTGTTAGAGGCAATCCGTT