1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTTGTCCTTGCATATGGTGCTGAAAGTGATAGAAGTCTTGGTATTCCAGGGGAGgtaagcttgatttattaagcgcttttcgtgaatttgctagaatttttgttgtttcattggttttgcctgcggtgtaagcaatggcttaatgttcttttattttgtgatggctatgcattaactgatagtttgagttactcttgtttcatttcttttaatattcctttccttctcag
species | Glycine max |
transcript | GLYMA14G40480.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCCTTGCATATGGTGCCGAAAGTGATAGAAGTCTTGGTATTCCAGGGGAG AACTTGAAAGGGATACATTCAGCTAGAGAGTTTGTTTGGTGGTATAATGGGEST: gi|23058880|gb|BU578342.1|BU578342
genomic: TCCTTGCATATGGTGCTGAAAGTGATAGAAGTCTTGGTATTCCAGGGGAGgtaagcttga ... tccttctcagAACTTGAAAGGGATACATTCAGCTAGAGAGTTTGTTTGGTGGTATAATGGG
EST: TCCTTGCATATGGTGCTGAAAGTGATAGAAGTCTTGGTATTCCAGGGGAG AACTTGAAAGGGATACATTCAGCTAGAGAGTTTGTTTGGTGGTATAATGGGEST: gi|7692675|gb|AW760776.1|AW760776
genomic: TCCTTGCATATGGTGCTGAAAGTGATAGAAGTCTTGGTATTCCAGGGGAGgtaagcttga ... tccttctcagAACTTGAAAGGGATACATTCAGCTAGAGAGTTTGTTTGGTGGTATAATGGG
EST: TCCTTGCATATGGTGCTGAAAGTGATAGAAGTCTTGGTATTCCAGGGGAG AACTTGAAAGGGATACATTCAGCTAGAGAGTTTGTTTGGTGGTATAATGGG
genomic: TCCTTGCATATGGTGCTGAAAGTGATAGAAGTCTTGGTATTCCAGGGGAGgtaagcttga ... tccttctcagAACTTGAAAGGGATACATTCAGCTAGAGAGTTTGTTTGGTGGTATAATGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTCCTTGCATATGGTGCTGAAAGTGATAGAAGTCTTGGTATTCCAGGGGAGgtaagcttgatttattaagcgcttttcgtgaatttgctagaatttttgttgtttcattggttttgcctgcggtgtaagcaatggcttaatgttcttttattttgtgatggctatgcattaactgatagtttgagttactcttgtttcatttcttttaatattcctttccttctcag
- - - - - - - - - - - - - - - AGAAGT