1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GCTTTGGACAAGATTAGGTTCCTCTCCCTCACGGATAAGGAGGTGTTGGGAGAAGGTGATAACACCAAGCTTGATATTCAGgttagtattgctatattctgattattatgcttttttttttaaggttgtttttggctatatgatttttatgaatacagtctaagcaatgctggtgttttattgttttggaactaaacttaaacatgttggtgctacag
species | Glycine max |
transcript | GLYMA14G40320.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CGGATAAGGAGGTGTTGGGAGAAGGTGATAACACCAAGCTTGATATTCAG ATTAAGTTGGACAAGGAAAAAGAAAATTCTEST: gi|193513896|gb|FK466502.1|FK466502
genomic: CGGATAAGGAGGTGTTGGGAGAAGGTGATAACACCAAGCTTGATATTCAGgttagtattg ... ggtgctacagATTAAGTTGGACAAGGAAAA-GAAAATTCT
EST: ATAAGGAGGTGTTGGGAGAAGGTGATAACACCAAGCTTAGAATAATTCAG ATTAAGTTGGACAAGGAAAAGAAAATTCTEST: gi|193681953|gb|FK622561.1|FK622561
genomic: ATAAGGAGGTGTTGGGAGAAGGTGATAACACCAAGCTT-GA-TA-TTCAGgttagtattg ... ggtgctacagATTAAGTTGGACAAGGAAAAGAAAATTCT
EST: CGGATAAGGAGGTGTTGGGAGAAGGTGATAACACCAAGCTTGATATTCAG ATTAAGTTGGACAAGGAAAAAGAAAATTCT
genomic: CGGATAAGGAGGTGTTGGGAGAAGGTGATAACACCAAGCTTGATATTCAGgttagtattg ... ggtgctacagATTAAGTTGGACAAGGAAAA-GAAAATTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTTGGACAAGATTAGGTTCCTCTCCCTCACGGATAAGGAGGTGTTGGGAGAAGGTGATAACACCAAGCTTGATATTCAGgttagtattgctatattctgattattatgcttttttttttaaggttgtttttggctatatgatttttatgaatacagtctaagcaatgctggtgttttattgttttggaactaaacttaaacatgttggtgctacag
- - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT