Sequence
atgc intronic sequence ATGC exonic sequenceGTGCTGTTCAACATCCCATTCGTGGTCTATTTTTGAGGAGTTACCTTTCTCAAGTCAGTAAAGATAAGTTGCCTGATATTGGCTATGAATATGAAGAGGGgtaaggttgttatttggttgttgatgaatttatgtttttaaatgtcttgtgcatcttgtcattttaatttagagtaatgtcgttatattctccaacaatt...
Basic information
species | Glycine max |
transcript | GLYMA14G40270.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G40270.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM5G844195_T03 (Zea mays), 5'ss of exon 4
---GTGCTGTTCAACATCCCATTCGTGGTCTATTTTTGAGGAGTTACCTTTCTCAAGTCAGTAAAGATAAGTTGCCTGATATTGGCTATGAATATGAAGAGGGgtaaggttgttatttggttgttgatgaatttatgtttttaaatgtcttgtgcatcttgtcattttaatttagagtaatgtcgttatattctccaacaatt-------
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GCCGAGGCATTCAACATCCTCTTCGTGGCCTTTTTTTGAGAAGTTACCTTTCTCAAATAAGCAGAGACAAATTGCCTGATATTGGTTCTGAGTACGAAGGgtactgtacct-ttacttaat-gccatgatatttcttaaccaaactattttgt-----ttagagtttcaat--agcatcatgctatttt-ttggacaagagttagcttat
upper sequence: GLYMA14G40270.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM5G825524_T01 (Zea mays), 5'ss of exon 4
---GTGCTGTTCAACATCCCATTCGTGGTCTATTTTTGAGGAGTTACCTTTCTCAAGTCAGTAAAGATAAGTTGCCTGATATTGGCTATGAATATGAAGAGGG-
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GCCGAGGCATTCAGCATCCCCTTCGTGGCCTTTTTCTGAGAAGTTATCTTTCTCAAATAAGCAGAGACAAGTTGCCTGATATTGGTTCCGAGTATGAAGGgtactgtacctttacttcatgtcatgatattacttaaccaagcctttttagagtttca---atagtatcaagctaatttttggccaagagttagtttgttctt--------
upper sequence: GLYMA14G40270.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G75850.1 (Arabidopsis thaliana), 5'ss of exon 4
---GTGCTGTTCAACATCCCATTCGTGGTCTATTTTTGAGGAGTTACCTTTCTCAAGTCAGTAAAGATAAGTTGCCTGATATTGGCTATGAATATGAAGAGGGgtaaggttgttatttggttgttg-atgaatttatgtttttaaatgtcttgtgcatcttgtcattttaatttagagtaatgtcgttatattctccaacaatt
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GTCGAGGTGTTCAACATCCTATTCGTGGCCTCTTTTTGAGGAGTTATCTCGCTCAAGTGAGCAGGGATAAGTTACCTGAGATTGGCTCAGACTACGAAG---Ggtgggtttgctctttcgttttttcatgagatttggttagctgtttgtttgttta-ctcgccttgcgatcttcttgtag-----------------------
upper sequence: GLYMA14G40270.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g14680.t01 (Vitis vinifera), 5'ss of exon 4
---GTGCTGTTCAACATCCCATTCGTGGTCTATTTTTGAGGAGTTACCTTTCTCAAGTCAGTAAAGATAAGTTGCCTGATATTGGCTATGAATATGAAGAGGGgtaaggttgttatttggttgttgatgaatttatgtttttaaatgtcttgtgcatcttgtcattttaatttagagtaatgtcgttatattctccaacaatt-
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GCCGTGGTATTCAACATCCTATACGTGGACTTTTCTTAAGAAGTTACCTTTCTCAAGTCAGTAGAGATAAATTACCTGACATTGGCTCTGACTATGAAG---Ggtaaggagataactcatttat-gtttctttacttttccttaaagtggatctcttcatgttagttgttgatagtttcaaatttgtgtgtttgtataccatctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209717785|gb|BW666058.1|BW666058EST: CAAGTCAGTAAAGATAAGTTGCCTGATATTGGCTATGAATATGAAGAGGG GGAATCTAATAGTGTGATGGACGCAGTTGAATTTGTTCTACAGAATTTC
genomic: CAAGTCAGTAAAGATAAGTTGCCTGATATTGGCTATGAATATGAAGAGGGgtaaggttgt ... tgtcctgcagGGAATCTAATAGTGTGATGGACGCAGTTGAATTTGTTCTACAGAATTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGCTGTTCAACATCCCATTCGTGGTCTATTTTTGAGGAGTTACCTTTCTCAAGTCAGTAAAGATAAGTTGCCTGATATTGGCTATGAATATGAAGAGGGgtaaggttgttatttggttgttgatgaatttatgtttttaaatgtcttgtgcatcttgtcattttaatttagagtaatgtcgttatattctccaacaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG