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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGCTGGGTTGGCATTCAAAAGGAGGTGGCAGAATAGAAGGAAACAAGAAGGGAAGCCTTATGACAATCCCAACATTGTCACTGGTGCCAATGTTCAGgtacacaagaaaatacttgcatgttctgccactgaaattttagcattgttgaaaattgtttttttttccaagagtctagcactaataatataaagagaaa...

Basic information

species Glycine max
transcript GLYMA14G39170.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G39170.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0011g06600.t01 (Vitis vinifera), 5'ss of exon 3
GTTGGCTGGGTTGGCATTCAAAAGGAGGTGGCAGAATAGAAGGAAACAAGAAGGGAAGCCTTATGACAATCCCAACATTGTCACTGGTGCCAATGTTCAGgtacacaagaaaatacttgcatgttctgccactgaaattttagc----attgttgaaaattgtttttttttc-caagagtctagcactaataatataaagagaaa--------------------------------------------------------------------
| | || ||| | || ||||| |||| ||||||||| |  || ||    || ||||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||     |   | ||   ||  |       || ||       | |  |||   |||   |   | |    |  ||||   |      || |     | |                                                                    
GCTAGCAGGGCTTGCTTTCAAGAGGAAGTGGCAGAACAAGAGAAAGGCTGAGGGGAAGCCTTATGACAAGCCCAACATCGTCACTGGTGCTAATGTTCAGgtacataacgccctggcttcaccctcctctttgagcatattgcttcttacttgtgagccttgggctaaatccatgggcttctaagcccgggcttaaacttctacatgattttggccctcaaacggctttccatggtggttgggattattaatcatatgcatttgtggatatag

upper sequence: GLYMA14G39170.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S34_308V6.1 (Physcomitrella patens), 5'ss of exon 3
GTTGGCTGGGTTGGCATTCAAAAGGAGGTGGCAGAATAGAAGGAAACAAGAAGGGAAGCCTTATGACAATCCCAACATTGTCACTGGTGCCAATGTTCAGgtaca-----caagaaaatacttgcatgttctgccactgaaattttagca-ttgttgaaaattgtttttttttccaagagtctagcactaataatataaagagaaa---------------------------
| | |||||  | ||||||||  |||  ||||||  |    | |||  ||  || |||||||  ||||| |||||||| ||||| ||||| ||||||||||||||     |||    ||   |    |       |   |||||  |  | |    | | |  | ||           |  |      |  || || |||   |                             
GCTCGCTGGTCTCGCATTCAAGCGGAAATGGCAGCTTGAGCGTAAAGCAGCTGGAAAGCCTTGGGACAAGCCCAACATGGTCACCGGTGCTAATGTTCAGgtacattttccaaacctatctctaagggaaaaattaaaaaaattaaaaaaatcaacggacagcgattaagaccaaggaaaccctttgttgttattagaaattcacttacaatatcagcgttcggtttgtgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208330761|gb|GE132650.1|GE132650
EST:     AAGGGAAGCCTTATGACAATCCCAACATTGTCACTGGTGCCAATGTTCAG                         GTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGCTGAAAGAGGTG
genomic: AAGGGAAGCCTTATGACAATCCCAACATTGTCACTGGTGCCAATGTTCAGgtacacaaga ... tctggtgaagGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGCTGAAAGAGGTG