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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCTATTGGTTATTTTCTAACAGATCTGGCGATGATTCTTTGGAATTTTCCAGCTTTAGGGGGTCTTGAATATgtaagtagaaataagcttttttgcaactagtaaatattatcaatacattatatgatactatatttttattttatcttatgcgcatttttttttacttccatgatatgttgaattcaatatttaagtcatgacttataaatacccacttcatcaatttacatttag

Basic information

species Glycine max
transcript GLYMA14G38830.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G38830.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0004g08450.t01 (Vitis vinifera), 5'ss of exon 5
GTTTCTATTGGTTATTTTCTAACAGATCTGGCGATGATTCTTTGGAATTTTCCAGCTTTAGGGGGTCTTGAATATgtaagtagaaataagcttttttgcaactagtaaatatt-atcaatacattatatgatactatatttttattttatcttatg-cgcatttttttttacttccatgatatgttgaattcaatatttaagtcatgacttataaatacccacttcatcaatttacatttag
 | || ||||||||||||||  ||||  |||| ||||||||||||||||||||||||||||| ||||| || |||||||||| ||| |   |   |    | |  || ||||  |   ||  | | |  || | ||| |||   |   |  || || |  ||  |   | |  ||                                                                   
ATCTCCATTGGTTATTTTCTGTCAGACTTGGCAATGATTCTTTGGAATTTTCCAGCTTTAGGCGGTCTGGAGTATgtaagtacaaagagaatgcatgctcaatgttagatatccaattatttactgttggagattatttttccttcaaagtttgtgacatatcctgaataaagtc-------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31461715|gb|CD403743.1|CD403743
EST:     ATCTGGCGATGATTCTTTGGAATTTTCCAGCTTTAGGGGCTCTTGAATAT                         GTTCTACACCACGGGATATCCATAGGTTCTATTACGCTATGTCTGCTAAGT
genomic: ATCTGGCGATGATTCTTTGGAATTTTCCAGCTTTAGGGGGTCTTGAATATgtaagtagaa ... ttacatttagGTTCTACACCACGGAATATCCATAGGTTCTATTACGCTATGTCTGCTAAGT
EST: gi|213608608|gb|DB967111.1|DB967111
EST:     ATCTGGCGATGATTCTTTGGAATTTTCCAGCTTTAGGGGGTCTTGAATAT                         GTTCTACACCACGGAATATCCATAGGTTCTATTACGCTATGTCTGCTAAGT
genomic: ATCTGGCGATGATTCTTTGGAATTTTCCAGCTTTAGGGGGTCTTGAATATgtaagtagaa ... ttacatttagGTTCTACACCACGGAATATCCATAGGTTCTATTACGCTATGTCTGCTAAGT
EST: gi|209697846|gb|BW663928.1|BW663928
EST:     ATCTGGCGATGATTCTTTGGAATTTTCCAGCTTTAGGGGGTCTTGAATAT                         GTTCTACACCACGGAATATCCATAGGTTCTATTACGCTATGTCTGCTAAGT
genomic: ATCTGGCGATGATTCTTTGGAATTTTCCAGCTTTAGGGGGTCTTGAATATgtaagtagaa ... ttacatttagGTTCTACACCACGGAATATCCATAGGTTCTATTACGCTATGTCTGCTAAGT
EST: gi|209697845|gb|BW663929.1|BW663929
EST:     ATCTGGCGATGATTCTTTGGAATTTTCCAGCTTTAGGGGGTCTTGAATAT                         GTTCTACACCACGGAATATCCATAGGTTCTATTACGCTATGTCTGCTAAGT
genomic: ATCTGGCGATGATTCTTTGGAATTTTCCAGCTTTAGGGGGTCTTGAATATgtaagtagaa ... ttacatttagGTTCTACACCACGGAATATCCATAGGTTCTATTACGCTATGTCTGCTAAGT