1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTTCCGAGGGGGTTGAGACTGCATTTACTGGTTTGAAAAAGAAGAAGAAGAAGCCTgtaagtcatatttatgctttttcatttttgctatctcttgagagtttaagtttttcatgtagctagttttttgttggaagcaatttggcatttgatgttgtttggttgtag
species | Glycine max |
transcript | GLYMA14G38600.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGACTGCATTTACTGGTTTGAAAAAGAAGAAGAAGAAGCCT GTTGAAATGGGTAACTTGAATGATGAGAGTGGAGATGCAATTGAGGATTTGEST: gi|192309791|gb|FG999920.1|FG999920
genomic: AGACTGCATTTACTGGTTTGAAAAAGAAGAAGAAGAAGCCTgtaagtcata ... ttggttgtagGTTGAAATGGGTAACTTGAATGATGAGAGTGGAGATGCAATTGAAGATTTG
EST: AAAAGAAGAAGAAGAAGCCT GTTGAAATGGGTAACTTGAATGATGAGAGTGGAGATGCAATTGAAGATTTGEST: gi|193304844|gb|FK270845.1|FK270845
genomic: AAAAGAAGAAGAAGAAGCCTgtaagtcata ... ttggttgtagGTTGAAATGGGTAACTTGAATGATGAGAGTGGAGATGCAATTGAAGATTTG
EST: A-GGGGTTGAGACTGCATTTACTGGTTTGAAAAAGAAGAAGAAGAAGCCT GTTGAAATGGGTAACTTGAATGEST: gi|193412491|gb|FK379514.1|FK379514
genomic: AGGGGGTTGAGACTGCATTTACTGGTTTGAAAAAGAAGAAGAAGAAGCCTgtaagtcata ... ttggttgtagGTTGAAATGGGTAACTTGAATG
EST: AGGGGGTTGAGACTGCATTTACTGGTTTGAAAAAGAAGAAGAAGAAGCCT GTTGAAATGGGTAACTTGAATGATGAGAGTGGAGATGCAATTGAAGATTTG
genomic: AGGGGGTTGAGACTGCATTTACTGGTTTGAAAAAGAAGAAGAAGAAGCCTgtaagtcata ... ttggttgtagGTTGAAATGGGTAACTTGAATGATGAGAGTGGAGATGCAATTGAAGATTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCCGAGGGGGTTGAGACTGCATTTACTGGTTTGAAAAAGAAGAAGAAGAAGCCTgtaagtcatatttatgctttttcatttttgctatctcttgagagtttaagtttttcatgtagctagttttttgttggaagcaatttggcatttgatgttgtttggttgtag
- - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - AGAAGC