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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAATTGAATCTATATTGCGCAAGGAATTAGGAAAGCCATTAGAAAGTGTTTATGAATACATTGACCCAACACCCATTGCTTCTGCGTCTATAGCACAGgtatatcttgttgcacacctatatttctctttcaaaaaaaatattattcggattactatgtggctgctaatgcatttggtatatcacatctag

Basic information

species Glycine max
transcript GLYMA14G36520.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G36520.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0067g03210.t01 (Vitis vinifera), 5'ss of exon 5
GGAAATTGAATCTATATTGCGCAAGGAATTAGGAAAGCCATTAGAAAGTGTTTATGAATACATTGACCCAACACCCATTGCTTCTGCGTCTATAGCACAGgtatatcttgttgcacacctatatttctctttcaaaaaaaatattattcggattactatg-tggctgctaatgcatttggtatatcacatctag
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AGATATCCAAAGAGTCTTGCGTGAAGAATTAGGGAGACCAATAGATAGTGTTTATGAATATGTTGACCCGACACCAATTGCTTCTGCCTCAATTGCACAGgtttatactatccccctctt-ttttttgctccccaaatttttatcattttgtttttcatgacgaatgattggaatcctgaaatgttaactccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120494303|gb|EH222470.1|EH222470
EST:     CCCATTGCTTCTGCGTCTATAGCACAG                         GTTCATGGAGCAAGGCTAAAAGGCTCTAGGGAGGATGTGGTTATAAAGGTC
genomic: CCCATTGCTTCTGCGTCTATAGCACAGgtatatcttg ... tcacatctagGTTCATGGAGCAAGGCTAAAAGGCTCTAGGGAGGATGTGGTTATAAAGGTC
EST: gi|208132790|gb|GD927797.1|GD927797
EST:     TTTATGAATACATTGACCCAACACCCTTTGCTTCTGCGTCTATAGCACAG                         GTTCATGGAGCAAGGCTAAAAGGCTCTAGGGAGGATGTGGTTATAAAGGTC
genomic: TTTATGAATACATTGACCCAACACCCATTGCTTCTGCGTCTATAGCACAGgtatatcttg ... tcacatctagGTTCATGGAGCAAGGCTAAAAGGCTCTAGGGAGGATGTGGTTATAAAGGTC
EST: gi|17519076|gb|BM188118.1|BM188118
EST:     TTTATGAATACATTGACCCAACACCCATTGCTTCTGCGTCTATAGCACAG                         GTTCATGGAGCAAGGCTAAAAGGCTCTAGGGAGGATGTGGTTATAAAGGTC
genomic: TTTATGAATACATTGACCCAACACCCATTGCTTCTGCGTCTATAGCACAGgtatatcttg ... tcacatctagGTTCATGGAGCAAGGCTAAAAGGCTCTAGGGAGGATGTGGTTATAAAGGTC
EST: gi|7690969|gb|AW759104.1|AW759104
EST:     TTTATGAATACATTGACCCAACACCCATTGCTTCTGCGTCTATAGCACAG                         GTTCATGGAGCAAGGCTAAAAGGCTCTAGGGAGGATGTGGTTATAAAGGTC
genomic: TTTATGAATACATTGACCCAACACCCATTGCTTCTGCGTCTATAGCACAGgtatatcttg ... tcacatctagGTTCATGGAGCAAGGCTAAAAGGCTCTAGGGAGGATGTGGTTATAAAGGTC