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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCCACCAAGGAAGAAGGTGTTTGTAGTGATTGGCATAAACACTGCCTTCAGTAGCAGGAAGCGGCGTGATTCGGTTAGAGAGACTTGGATGCCTCAAGgtatcatgtgtttctgatagaaactgttttaatctaatctaaatggtgatggactaaattctaacaagctgtaattttggctcctcttcttgatcag

Basic information

species Glycine max
transcript GLYMA14G33700.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G33700.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os09g27950.1 (Oryza sativa), 5'ss of exon 4
GGCCCACCAAGGAAGAAGGTGTTTGTAGTGATTGGCATAAACACTGCCTTCAGTAGCAGGAAGCGGCGTGATTCGGTTAGAGAGACTTGGATGCCTCAAGgtatcatgtgtttctgatagaaactgttttaatctaatctaa-atggtgatggactaaattctaacaagctgtaattttggctcctcttcttgatcag-------
 |||  | ||||||||| |  |||||||||||||| || |||||||| ||||||||||||||||| || ||||| ||| |  |||| ||||||||||||||| ||||   ||||  ||  ||    |  || |  |||   | ||||  ||   | |   | ||  ||  |   | |     || | ||| |  | ||       
AGCCAGCAAAGGAAGAAAGCTTTTGTAGTGATTGGGATCAACACTGCATTCAGTAGCAGGAAGCGTCGGGATTCTGTTCGGCAGACCTGGATGCCTCAAGgt-tcatacttttc-aatgcaacacatagtactgcaatgagacatggctatttgc-atgctttactaacttt--actggatttcttattcatagttagaagccat

upper sequence: GLYMA14G33700.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os02g35870.1 (Oryza sativa), 5'ss of exon 4
GGCCCACCAAGGAAGAAGGTGTTTGTAGTGATTGGCATAAACACTGCCTTCAGTAGCAGGAAGCGGCGTGATTCGGTTAGAGAGACTTGGATGCCTCAAGgtatcatgtgtttctgatagaaactgttttaatctaatctaaatggtgatggactaaattctaacaagctgtaattttggctcctcttcttgatcag-------
 ||| ||||||||||||||  ||||| || |||||  ||||||| || ||||| ||| | ||||| |||||||| ||  ||||||| |||||||||||||||  | | | | |   ||   |||| | |  ||  | |   ||    | |  | ||   |   |||   | | |||||   || || || |   ||        
AGCCAACCAAGGAAGAAGGCATTTGTTGTAATTGGAGTAAACACCGCATTCAGCAGCCGCAAGCGCCGTGATTCAGTGCGAGAGACATGGATGCCTCAAGgttgc-tatttcttgtattataactttatggatgaactagcaagacggttctattattgttagaca---tttcatttttaatcatcatcatctccaaggctctt

upper sequence: GLYMA14G33700.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G133613_T02 (Zea mays), 5'ss of exon 4
GGCCCACCAAGGAAGAAGGTGTTTGTAGTGATTGGCATAAACACTGCCTTCAGTAGCAGGAAGCGGCGTGATTCGGTTAGAGAGACTTGGATGCCTCAAGgtatcatgtgtttctga-tagaaactgttttaatctaatctaaatggtgatgg-actaaattctaacaagctgta-attttggctcctcttcttgatcag------------------------------------------------------------------------------------
 |    |  ||||  | |||||| || ||||| ||  | ||||| |||||||| ||||||||||| || ||||| || || ||||| ||||||||||||||| || ||  | | ||  |     | |   | ||  |    ||||| |||||   |   |||||  |    | |  |||||      | |||||||                                                                                        
AGTAAGCAGAGGAGAAGGGTGTTCGTGGTGATCGGGGTCAACACCGCCTTCAGCAGCAGGAAGCGTCGGGATTCCGTGAGGGAGACCTGGATGCCTCAAGgt-tcgtgattctttgtctttcccccggactgatgcagaggaaatgatgatgatgcaggattctctctgtttatttatttttatatattttcttgaaagatccaatggcgcaggaaatatccattagggctgactgctatttctcttttgttttactgtgcttgtctgacctgctgtttatcag

upper sequence: GLYMA14G33700.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G070708_T02 (Zea mays), 5'ss of exon 4
GGCCCACCAAGGAAGAAGGTGTTTGTAGTGATTGGCATAAACACTGCCTTCAGTAGCAGGAAGCGGCGTGATTCGGTTAGAGAGACTTGGATGCCTCAAGgtatcatgtgtttctgatagaaactgttttaatctaatctaaatggtgatggactaaattctaacaagctgtaattttggctcctcttcttgatcag----
  || ||||||||| ||||  ||||| || |||||  | |||||||| ||||| ||| | ||||| |||||||| ||  | ||||| ||||||||||||||| |   ||   |||  ||| |  |     ||  ||   ||   | |  |  | || |||    |||    ||| |||  |   || |   ||||      
AACCAACCAAGGAAAAAGGCTTTTGTTGTCATTGGAGTCAACACTGCATTCAGCAGCCGCAAGCGCCGTGATTCTGTCCGGGAGACATGGATGCCTCAAGgtgtgtagttggtctagtagcagttaaaacaaattatggtatgggctcgtctattagatttgcgcaatgattaactttt-cagttccttgcgatctctaca

upper sequence: GLYMA14G33700.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ30358 (Selaginella moellendorffii), 5'ss of exon 4
GGCCCACCAAGGAAGAAGGTGTTTGTAGTGATTGGCATAAACACTGCCTTCAGTAGCAGGAAGCGGCGTGATTCGGTTAGAGAGACTTGGATGCCTCAAGgtatcatgtgtttctgatagaaactgttttaatctaatctaaatggtgatggactaaattctaacaagctgtaattttggctcctcttcttgatcag
|     ||  |  |||| || ||||| ||||| || |||||||| || || || ||  | ||||| |||||||| ||| ||||||| ||||||||||||||||                 ||   |  | ||   | ||| ||  ||| | ||||   || | |     |  |                        
GCTGAGCCTCGACAGAAAGTTTTTGTTGTGATCGGAATAAACACCGCTTTTAGCAGTCGTAAGCGTCGTGATTCCGTTCGAGAGACATGGATGCCTCAAGgta-----------------aattcggctcaacgcattctcaa--gtgcttgactc--ttttcatttcttccag-----------------------

upper sequence: GLYMA14G33700.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ21395 (Selaginella moellendorffii), 5'ss of exon 4
GGCCCACCAAGGA-AGAAGGTGTTTGTAGTGATTGGCATAAACACTGCCTTCAGTAGCAGGAAGCGGCGTGATTCGGTTAGAGAGACTTGGATGCCTCAAGgtatcatgtgtttctgatagaaactgttttaatctaatctaaatggtgatggactaaattctaacaagctgtaattttggctcctcttcttgatcag
    || ||  || | ||||  || || ||||| ||||||||||| || ||||| ||| ||||||| ||||| || |||||||| || |||||||| || |||     | ||  |        ||| ||||  |    |  |  |  | ||   || |  | | ||  | |  | ||||                   
-AATCATCAGAGACAAAAGGCCTTCGTGGTGATCGGCATAAACACGGCTTTCAGCAGCCGGAAGCGTCGTGACTCTGTTAGAGAAACATGGATGCCACAGGgt-----gagtccc------gcactttttttcttcttttgagttttttatttgctcatgtatcacttgtttcacttttcag----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208142940|gb|GD941524.1|GD941524
EST:     GTAGCAGGAAGCGGCGTGATTCGGTTAGAGAGACTTGGATGCCTCAAG                         GTGAACAGCTTCTTCAATTGGAACGCGAGAAGGGAATTGTCATCAGATTCA
genomic: GTAGCAGGAAGCGGCGTGATTCGGTTAGAGAGACTTGGATGCCTCAAGgtatcatgtg ... tcttgatcagGTGAACAGCTTCTTCAATTGGAACGCGAGAAGGGAATTGTCATCAGATTCA