Sequence
atgc intronic sequence ATGC exonic sequenceCTTCTTGAGGCCAACAGGCTCCTGCGAGCGGGTGGCTACTTTGTCTGGGCTGCACAGCCTGTTTACAAACATGAAGAGACCCTTCAAGAACAATGGAAAGgtagctcatattttctgtgttcaccataacaatagtgtacatctttcagtgggttgatacttaggggtctactattttctcccttcattctttgtgatcaacactccaacttcatatggtatcaaatgacctagaccttcatatattgagatgagtatttagtttaaagtttaaacccattgatatttgaacttaacag
Basic information
species | Glycine max |
transcript | GLYMA14G24900.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G24900.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G77260.1 (Arabidopsis thaliana), 5'ss of exon 4
CTTCTTGAGGCCAACAGGCTCCTGCGAGCGGGTGGCTACTTTGTCTGGGCTGCACAGCCTGTTTACAAACATGAAGAGACCCTTCAAGAACAATGGAAAGgtagctcatattttctgtgttcaccataacaatagtgtacatctttcagtg-ggttgatacttaggggtctactattttctcccttcattctttgtgatcaacactccaacttcatatggtatcaaatgacctagaccttcatatattgagatgagtatttagtttaaagtttaaacccattgatatttgaacttaacag
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CTTCTTGAAGTTAATAGAATGCTTAGAGCAGGAGGCTACTTTGTTTGGGCTGCACAACCCGTTTACAAACATGAGGATAACTTGCAAGAGCAGTGGAAAGgt---ttgtatatt----attcaacaaaataatt-tgtctgctatggagtttaactaaaatatgggtgttgcttctgcgctttgattatctttttcag------------------------------------------------------------------------------------------------------
upper sequence: GLYMA14G24900.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g01600.t01 (Vitis vinifera), 5'ss of exon 4
CTTCTTGAGGCCAACAGGCTCCTGCGAGCGGGTGGCTACTTTGTCTGGGCTGCACAGCCTGTTTACAAACATGAAGAGACCCTTCAAGAACAATGGAAAGgtagctcatattttctgtgttcaccataacaatagtgtacatctttcagtgggttgatacttaggggtctactattttctcccttcattctttgtgatcaacactccaacttcatatggtatcaaatgacctagaccttcatatattgagatgagtatttagtttaaagtttaaacccattgatatttgaacttaacag
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CTTCTTGAGGTCAACAGGATGCTAAGGGCAGGAGGATACTTTGCTTGGGCTGCACAGCCTGTTTATAAACATGAAGGGAACCTCCAAGAACAGTGGAAAGgtagctcatccaatacatcctattcaaagtatagatacagatgttt--gtgg-ctagcact----atctttctgaattgctttttgaagttttatattctttatctt--------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6482062|gb|AW201333.1|AW201333EST: TGCACAGCCTGTTTACAAACATGAAGAGACCCTTCAAGAACAATTNAAAG AAATTGGAGACCCTGACAGCTAGCATTTGTTGGGAACTTGTACGAAAGGAG
genomic: TGCACAGCCTGTTTACAAACATGAAGAGACCCTTCAAGAACAATGGAAAGgtagctcata ... aacttaacagAAAT-GGAGAACCTGACAGCTAGCATTTGTTGGGAACTTGTACGAAAGGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTCTTGAGGCCAACAGGCTCCTGCGAGCGGGTGGCTACTTTGTCTGGGCTGCACAGCCTGTTTACAAACATGAAGAGACCCTTCAAGAACAATGGAAAGgtagctcatattttctgtgttcaccataacaatagtgtacatctttcagtgggttgatacttaggggtctactattttctcccttcattctttgtgatcaacactccaacttcatatggtatcaaatgacctagaccttcatatattgagatgagtatttagtttaaagtttaaacccattgatatttgaacttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC