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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGAGCTTGTCTCCCGTGTTGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTGatatccttacatctttgtttgtctcaaatagcaatttagcaaaattttcaatccttaaacacaaatttgactctactttgaattgttctctttaaaatga...

Basic information

species Glycine max
transcript GLYMA14G24450.1
intron # 4
splice site 5'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11688049|gb|BF595725.1|BF595725
EST:     GAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTG                         ATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
genomic: GAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTGatatccttac ... cgaaattcacATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
EST: gi|192298913|gb|FG987658.1|FG987658
EST:     TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTG                         ATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
genomic: TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTGatatccttac ... cgaaattcacATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
EST: gi|192301050|gb|FG990120.1|FG990120
EST:     TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTG                         ATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
genomic: TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTGatatccttac ... cgaaattcacATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
EST: gi|151403794|gb|EV273604.1|EV273604
EST:     TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTG                         ATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
genomic: TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTGatatccttac ... cgaaattcacATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
EST: gi|207817966|gb|GD789815.1|GD789815
EST:     TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTG                         ATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
genomic: TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTGatatccttac ... cgaaattcacATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
EST: gi|24135596|gb|BU926106.1|BU926106
EST:     TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTG                         ATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
genomic: TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTGatatccttac ... cgaaattcacATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
EST: gi|23729172|gb|BU762672.1|BU762672
EST:     TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTG                         ATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
genomic: TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTGatatccttac ... cgaaattcacATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
EST: gi|20448941|gb|BQ253065.1|BQ253065
EST:     TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTG                         ATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
genomic: TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTGatatccttac ... cgaaattcacATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
EST: gi|192299073|gb|FG992849.1|FG992849
EST:     TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTG                         ATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
genomic: TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTGatatccttac ... cgaaattcacATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
EST: gi|37995684|gb|CF807273.1|CF807273
EST:     TGAGAAAGATCTTCTCANAATCATGGCTGGAGGAACAGCGGACAATCTTG                         ATGTGGAAACAGCTGAGCA
genomic: TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTGatatccttac ... cgaaattcacATGTGGAAACAGCTGAGCA
EST: gi|16342156|gb|BI967751.1|BI967751
EST:     TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTG                         ATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
genomic: TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTGatatccttac ... cgaaattcacATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
EST: gi|31465829|gb|CD407857.1|CD407857
EST:     GAGAAAGATCTTCTCAAAATCATGGCTGGAGCGAACAGCGGACAATCTTG                         ATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
genomic: GAGAAAGATCTTCTCAAAATCATGGCTGGAG-GAACAGCGGACAATCTTGatatccttac ... cgaaattcacATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
EST: gi|298194401|gb|HO041049.1|HO041049
EST:     GCGGACAATCTTG                         ATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
genomic: GCGGACAATCTTGatatccttac ... cgaaattcacATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
EST: gi|208034450|gb|GD833814.1|GD833814
EST:     TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTG                         ATGTGGAAACAG
genomic: TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTGatatccttac ... cgaaattcacATGTGGAAACAG
EST: gi|254337576|gb|GR849422.1|GR849422
EST:     TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTG                         ATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
genomic: TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTGatatccttac ... cgaaattcacATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
EST: gi|254337575|gb|GR849421.1|GR849421
EST:     TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTG                         ATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
genomic: TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTGatatccttac ... cgaaattcacATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
EST: gi|254348952|gb|GR860224.1|GR860224
EST:     TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTG                         ATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
genomic: TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTGatatccttac ... cgaaattcacATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
EST: gi|16342161|gb|BI967756.1|BI967756
EST:     TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTG                         ATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
genomic: TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTGatatccttac ... cgaaattcacATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
EST: gi|120493319|gb|EH221486.1|EH221486
EST:     TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTG                         ATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
genomic: TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTGatatccttac ... cgaaattcacATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
EST: gi|151395288|gb|EV265159.1|EV265159
EST:     TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTG                         ATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
genomic: TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTGatatccttac ... cgaaattcacATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
EST: gi|14126003|gb|BG790441.1|BG790441
EST:     TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTG                         ATGNNNNNNNAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
genomic: TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTGatatccttac ... cgaaattcacATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
EST: gi|58014523|gb|CX701265.1|CX701265
EST:     TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTG                         ATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA
genomic: TGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTGatatccttac ... cgaaattcacATGTGGAAACAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTGAGCTTGTCTCCCGTGTTGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTGatatccttacatctttgtttgtctcaaatagcaatttagcaaaattttcaatccttaaacacaaatttgactctactttgaattgttctctttaaaatga

- - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - GGAGGA