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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcacaaaacttgtttgttttttgtggttttgcaaattaatgtagtcgtgttttaccatacttaacatggataatttctagcaatcaacccagaaa...

Basic information

species Glycine max
transcript GLYMA14G24270.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G24270.3 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os02g08520.1 (Oryza sativa), 5'ss of exon 5
GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggt---cacaaaacttgtttgttttttgtggttttgcaaattaatgtagtcgtgttttaccatacttaacatggataatttcta--gcaatcaacccagaaa---
||| || || ||||||||||| |||||||||||||| || || || || ||||||||||||||| | |||| ||||||   ||||||  ||   ||  |||  | | ||     ||   |||| |  || | | | ||| |  || | ||   | ||||||     |||||    ||||   |   |      
GGAACTAGCGAAAGATTTTGTGGTTTCTGGCACTGCTTCAGAATCACTATATGGTGCTTGTGAGTCCATGTATAAGCCAAGCATGgttagtttacatgaaaactatctgcagaatggtattttacttat-agtttggtc-tccttgagcactgtaaacatgacatttttctgtcacaattttctttggtgaag

upper sequence: GLYMA14G24270.3 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G045371_T02 (Zea mays), 5'ss of exon 5
GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtagg--tcacaaaacttgtttgttttttgtggttttgcaaattaatgtagtcgtg--ttttaccatacttaa----catggataatttctagcaat-caacccagaaa----------------------------------------------------
|||||| || || ||||||||||||||||| || ||||| || ||| ||||||||||||||||  | ||||  ||||| ||||||||| |     | |  | || |       | |    |||  |   | | | ||  ||  | |    ||||  |      |||    |||| | |   | ||     | |                                                     
GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTATGGTGCTTGTGAATCCATGTACAAGCCGGACATGgtatgcgcttcgatgcatgctgtcgacctatttccttgagatccacttttgttttgggtctgcgtatacccatgttttatgatctatttttggatgtacattattgtagtttgttctgtttttagttgaatgacatcatcttgttatttttcatggcatag

upper sequence: GLYMA14G24270.3 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G117544_T01 (Zea mays), 5'ss of exon 5
GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcacaaaacttgtttgttttttgtggttttgcaaattaatgt-agtcgtgttttaccatacttaacatggataatttctagcaatcaacccagaaa
||| || |||||||||||||| || || || ||||| || ||||| || ||||||||||||||| | |||| ||||||  |||||||  ||  |   ||  |     |   |   |     |   | | ||  | |  | | |      | ||    | || | | | | | | || |    |   
GGAACTAGCAAAAGATTTTGTGGTCTCCGGTACTGCTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttctttacacgagaactcgatacagaaa-acctttaactgccaattctttctagtttgagttgtttttgaaagtatttggtattctattatgtgt

upper sequence: GLYMA14G24270.3 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G092975_T01 (Zea mays), 5'ss of exon 5
GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggt--cacaaaacttgtttgttttttgtggttttgcaaattaatgtagtcgtgt-------tttaccatacttaacatgga--taatttctagcaatcaacccagaaa-------------------------------------------------
|||||| || || ||||||||||| ||||| || ||||| || ||| ||||||||||||||||| | ||||  |||||  |||||||| |     | |  | ||||       | |     ||  |   | | | ||  ||        | ||||||  || |    |   ||||||   |    ||   | | |                                                  
GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgcttcgatgcatgttgtgaacctatttccctgagatccacttttgttttgggtctgcgtctaccatgttttatgaagttctaatttggggtgtacattactgtactttgttctattcttagtcaaatgacatcttgttatttttcatgacatag

upper sequence: GLYMA14G24270.3 (Glycine max), 5'ss of exon 4
lower sequence: AT1G21720.1 (Arabidopsis thaliana), 5'ss of exon 5
GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcacaaaacttgtttgttttttgtggttttgcaaattaatgtagtcgtgttttaccatacttaacatggataatttctagcaat-caacccagaaa---
 ||| | || |||||||||||||| ||||| ||||| || || || || ||||| ||||||||||||||||  ||||| || |||||  | |    |||    |  |  | | | ||| |     | |||   | |     | |  || ||||| ||    |  |    ||  | ||     | |    
AGAGTTAGCTAAAGATTTTGTTGTATCTGGAACTGCTTCAGAATCACTCTATGGAGCTTGTGAGGCAATGTACAAGCCAGATATGgtttgcccgctaacaacctcatcatctcttgttatatttctaaatcccgacaa---tgaaaatgcttaa-attaccacatctaggcgttgcagtttggtaggtt

upper sequence: GLYMA14G24270.3 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g02260.t01 (Vitis vinifera), 5'ss of exon 5
GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcacaaaacttg--tttgttttttgtggttttgcaaattaatgtagtcgtgttttaccatacttaacatggataatttctagcaatcaacccagaaa
||||||||| ||||||||||||||| |||| ||||| ||||||||||| |||||||| || ||||| ||||| ||||| ||||||||  ||| ||| | |    ||   ||  | |  | ||| ||    || |  |  | ||     |   |  | |||  |    | |   ||   ||  |    
GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctcaatattaaacttgaattaattttctattgaaatcctattttatttttttaagttaagttccatatgcttggaatgtgtgaactcacatatg--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192318541|gb|FK011365.1|FK011365
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|151405517|gb|EV275331.1|EV275331
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|6914510|gb|AW396040.1|AW396040
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTGCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|37995705|gb|CF807294.1|CF807294
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|192331116|gb|FK020336.1|FK020336
EST:     TATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|19346754|gb|BM891634.1|BM891634
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|9819697|gb|BE555210.1|BE555210
EST:     ATCCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: AT-CTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|298182182|gb|HO026357.1|HO026357
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|151410578|gb|EV280393.1|EV280393
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|208277689|gb|GE078266.1|GE078266
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|298198899|gb|HO042262.1|HO042262
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|23726885|gb|BU761446.1|BU761446
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|17519828|gb|BM188870.1|BM188870
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|26059647|gb|CA802561.1|CA802561
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|7233908|gb|AW569250.1|AW569250
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|7926292|gb|AW832318.1|AW832318
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|16348147|gb|BI973742.1|BI973742
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA