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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTATGTTGACTGCTATTAAAATGGAAGTCATGACTCCCTCCTTGGAGTCTCCAGATGAGGGCTGTCTAGgttggctatcactcaatgtgccacttaattgttagttattaagtctttttgctcactggccataaaattaacatgttaatatctgttatttcag

Basic information

species Glycine max
transcript GLYMA14G22250.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193724563|gb|FK656811.1|FK656811
EST:     AATGGAAGTCATGACTCCCTCCCTGGAGTCTCCAGATGAGGGCTGTCTAG                         CTATTGATTTCCACATGCCTCCAATTTGTTCTACCGATTGTTAGGCCT
genomic: AATGGAAGTCATGACTCCCTCCTTGGAGTCTCCAGATGAGGGCTGTCTAGgttggctatc ... gttatttcagCTATTGATTTCCACATGCCTCCAATTTGTTCT-CCGATTGTTAGGCCT
EST: gi|207765175|gb|GD735448.1|GD735448
EST:     AATGGAAGTCATGACTCCCTCCTTGGAGTCTCCAGATGAGGGCTGTCTAG                         CTATTGATTTCCACATGCCTCCAATTTGTTCTCCGATTGTTAGGCCT
genomic: AATGGAAGTCATGACTCCCTCCTTGGAGTCTCCAGATGAGGGCTGTCTAGgttggctatc ... gttatttcagCTATTGATTTCCACATGCCTCCAATTTGTTCTCCGATTGTTAGGCCT
EST: gi|254332143|gb|GR845973.1|GR845973
EST:     AATGGAAGTCATGACTCCCTCCTTGGAGTCTCCAGATGAGGGCTGTCTAG                         CTATTGATTTCCACATGCCTCCAATTTGTTCTCCGATTGTTAGGCCTGGCA
genomic: AATGGAAGTCATGACTCCCTCCTTGGAGTCTCCAGATGAGGGCTGTCTAGgttggctatc ... gttatttcagCTATTGATTTCCACATGCCTCCAATTTGTTCTCCGATTGTTAGGCCTGGCA
EST: gi|208323403|gb|GE123990.1|GE123990
EST:     AATGGAAGTCATGACTCCCTCCTTGGAGTCTCCAGATGAGGGCTGTCTGG                         CTATTGATTTCCACATGCCTCCAATTTGTTCTCCGATT
genomic: AATGGAAGTCATGACTCCCTCCTTGGAGTCTCCAGATGAGGGCTGTCTAGgttggctatc ... gttatttcagCTATTGATTTCCACATGCCTCCAATTTGTTCTCCGATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACTATGTTGACTGCTATTAAAATGGAAGTCATGACTCCCTCCTTGGAGTCTCCAGATGAGGGCTGTCTAGgttggctatcactcaatgtgccacttaattgttagttattaagtctttttgctcactggccataaaattaacatgttaatatctgttatttcag

- - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG