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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTTGTTCCCCACCGCAGATTCTGCAAGGCCATTTTCAATGCTTGGACTTGGTGACATTGTTATCCCTGgtaggttgaatcttttatattgatgtattttcctctaatgttgacagcccttttgtgagttgtaatattaatgtttagtattttactacttggtatacat...

Basic information

species Glycine max
transcript GLYMA14G21190.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G21190.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G150251_T01 (Zea mays), 5'ss of exon 9
CTTTTGTTCCCCACCGCAGATTCTGCAAGGCCATTTTCAATGCTTGGACTTGGTGACATTGTTATCCCTGgtaggttg-aatcttttatattgatgtattttcctctaatgttgacagcccttttgtgagttgtaatattaatgtttagtattt-tactacttggtatacat
||| |||| || || || |||  |||| ||||||| || |||||||| |||||||||||||| || ||||||  ||   ||   ||||| |   |||  | |  |  | | |     ||  |  |||   || |        | || |    |  ||  |     | ||   
CTTCTGTTTCCTACTGCGGATGATGCACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaataaaaatttatttccttgtgctatgttacattctgctttgcagtgatgtagattttgccccccttattgaacggtaatatcagcccctgtag--

upper sequence: GLYMA14G21190.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0009g03520.t01 (Vitis vinifera), 5'ss of exon 9
CTTTTGTTCCCCACCGCAGATTCTGCAAGGCCATTTTCAATGCTTGGACTTGGTGACATTGTTATCCCTGgtagg----ttgaatcttttatattgatgtattttcctctaat-gttgacagcccttttgtgagttgtaatattaatgtttagtattttactacttggtatacat
||||||||||| || || ||||||||  |||||||||| ||||||||||||||||||||||| |||||||||| |    |||||  |    | |  |  ||| ||| |    | ||  |  |   || |||  |  |  ||||||  |   |   ||||     | ||  |    
CTTTTGTTCCCAACAGCTGATTCTGCCCGGCCATTTTCCATGCTTGGACTTGGTGACATTGTAATCCCTGgtaaggtgtttgaaattcaattttaaaaatatcttcattgggttgtccattgtt-ttctgtttgcagatatattagagaagacatttttgaagttgggagt----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192334327|gb|FK025532.1|FK025532
EST:     TTCTGCAAGGCCATTTTCAATGCTTGGACTTGGTGACATTGTTATCCCTG                         GTATCTTTGTAGCTTTGGCCTTGCGGTTTGATGTTTCTAGAGGAAAACAGC
genomic: TTCTGCAAGGCCATTTTCAATGCTTGGACTTGGTGACATTGTTATCCCTGgtaggttgaa ... tccccttcagGTATCTTTGTAGCTTTGGCCTTGCGGTTTGATGTTTCTAGAGGAAAACAGC
EST: gi|192297521|gb|FG992719.1|FG992719
EST:     TTCTGCAAGGCCATTTTCAATGCTTGGACTTGGTGACATTGTTATCCCTG                         GTATCTTTGTAGCTTTGGCCTTGCGGTTTGATGTTTCTAGAGGAAAACAGC
genomic: TTCTGCAAGGCCATTTTCAATGCTTGGACTTGGTGACATTGTTATCCCTGgtaggttgaa ... tccccttcagGTATCTTTGTAGCTTTGGCCTTGCGGTTTGATGTTTCTAGAGGAAAACAGC
EST: gi|192301904|gb|FG995522.1|FG995522
EST:     TTCTGCAAGGCCATTTTCAATGCTTGGACTTGGTGACATTGTTATCCCTG                         GTATCTTTGTAGCTTTGGCCTTGCGGTTTGATGTTTCTAGAGGAAAACAGC
genomic: TTCTGCAAGGCCATTTTCAATGCTTGGACTTGGTGACATTGTTATCCCTGgtaggttgaa ... tccccttcagGTATCTTTGTAGCTTTGGCCTTGCGGTTTGATGTTTCTAGAGGAAAACAGC