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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGTCATTTTGCTCGTGAATGCCGCATGCGTGGTGGTTCAGGAAGACGCCGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGgtcagattgctttcctttattcttttgatcctatgtgggcatttgtatttttagtattttcctgaagattattttatattttatttgtctttaatgatat...

Basic information

species Glycine max
transcript GLYMA14G17930.4
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G17930.3 (Glycine max), 5'ss of exon 4
lower sequence: Vv04s0069g00800.t01 (Vitis vinifera), 5'ss of exon 4
---CTGGTCATTTTGCTCGTGAATGCCGCATGCGTGGTGGTTCAGGAAGACGCCGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGgtcagattgctttcctttattcttttgatcctatgtgggcatttgtatttttagtattttcctgaa--gattattttatattttatttg--tctttaatgatat--
   ||||||||||||| |||||||||||  ||||||||||||| |||||||| || || || ||    || || | ||| ||||||||||||||||| || |||| |||| | ||        | || |  |  |||     || || |||| || ||  |||  || |  | ||        |||| |      |   | |   |   
AACCTGGTCATTTTGCCCGTGAATGCCGTTTGCGTGGTGGTTCTGGAAGACGTCGCAGTCGCAGC---CCTAGGTACCGCAGGAGCCCAAGTTATGGTCGTAGgtgagatggtttgaggaacatgttctatttttat-----cagttctattatt-gtggtttattggactggttgccagcctttttttccaaccccccacttccacct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58025100|gb|CX711841.1|CX711841
EST:     CGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAG                         GAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCG
genomic: CGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGgtcagattgc ... gtatgactagGAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCG
EST: gi|298170870|gb|HO015846.1|HO015846
EST:     CGTAGCCGTAGTCCGCCCAGATTCCGCAGGAGCCCAAGTTATGGGCGAAG                         ---T--C---C-TCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCG
genomic: CGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGgtcagattgc ... gtatgactagGAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCG
EST: gi|213589771|gb|DB969592.1|DB969592
EST:     CGTAGCCGTAGTCCACCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAG                         GAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCGCCGTAGTTTGTCACCTCG
genomic: CGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGgtcagattgc ... gtatgactagGAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCG
EST: gi|13790205|gb|BG652796.1|BG652796
EST:     CGTANCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAG                         GAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCG
genomic: CGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGgtcagattgc ... gtatgactagGAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCG
EST: gi|254321482|gb|GR824799.1|GR824799
EST:     CGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGC----                         --G--A-AGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCG
genomic: CGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGgtcagattgc ... gtatgactagGAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCG
EST: gi|192324562|gb|FK016453.1|FK016453
EST:     CGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAG                         GAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCG
genomic: CGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGgtcagattgc ... gtatgactagGAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCG
EST: gi|151395696|gb|EV265573.1|EV265573
EST:     CGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAG                         GAGTTACAGTCCTCGTGGGCGGTCCCCTAAGCACCGCAGTTTGTCACCTCG
genomic: CGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGgtcagattgc ... gtatgactagGAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCG
EST: gi|298185492|gb|HO030705.1|HO030705
EST:     CGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAG                         GAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCG
genomic: CGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGgtcagattgc ... gtatgactagGAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCG
EST: gi|7285723|gb|AW598210.1|AW598210
EST:     CGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAG                         GAGTTACAGTCCTCGTGGGCGGTCCCCTATGCACCGCAGATTGTCATCTCG
genomic: CGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGgtcagattgc ... gtatgactagGAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCG
EST: gi|9983911|gb|BE658019.1|BE658019
EST:     CGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAG                         GAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCG
genomic: CGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGgtcagattgc ... gtatgactagGAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCG
EST: gi|192295485|gb|FG987099.1|FG987099
EST:     CGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAG                         GAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCG
genomic: CGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGgtcagattgc ... gtatgactagGAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCG
EST: gi|21675883|gb|BQ628234.1|BQ628234
EST:     AGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAG                         GAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCG
genomic: AGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGgtcagattgc ... gtatgactagGAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCG
EST: gi|8669525|gb|BE190632.1|BE190632
EST:     CGGAGCCGTAGTCCGCGCAGATTCCGTAGGAGCCCAAGTTATGGGCGAGG                         GAGTTACAGTCCTCGTGGGCGG
genomic: CGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGgtcagattgc ... gtatgactagGAGTTACAGTCCTCGTGGGCGG
EST: gi|298198145|gb|HO039684.1|HO039684
EST:     CGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAG                         GAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCA
genomic: CGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGgtcagattgc ... gtatgactagGAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCA
EST: gi|192300160|gb|FG989282.1|FG989282
EST:     CGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAG                         GAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCG
genomic: CGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGgtcagattgc ... gtatgactagGAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCG
EST: gi|298178379|gb|HO024114.1|HO024114
EST:     CGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAATTATGGGCGAAG                         ---T--C---C-TCGTGGGCGGTCCCCTAAGCACCGCAGTTTGTCACCTCG
genomic: CGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGgtcagattgc ... gtatgactagGAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCG
EST: gi|7591104|gb|AW706844.1|AW706844
EST:     CGTAGCCGTAGTCCGCCCAGATTCCGTAAGAGCCCAAGTTTTGGGCCAAG                         GAGTTACAGTCCTCGTGGGCGGTCCCATAAGCACCGCAGTTTGTCACCTCG
genomic: CGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGgtcagattgc ... gtatgactagGAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCG
EST: gi|298179203|gb|HO027674.1|HO027674
EST:     CGTAGCCGTAGTCCACCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAG                         GAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCGCCGTAGTTTGTCACCTCG
genomic: CGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGgtcagattgc ... gtatgactagGAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCG
EST: gi|298165150|gb|HO011199.1|HO011199
EST:     CGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAG                         GAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCG
genomic: CGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGgtcagattgc ... gtatgactagGAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCG