1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGCTCTTCTGATCGTAGGCTTCTTGCTGTTATCGGAGTGTATACTGGATTTGGGAGTAAATTGAAGAGAAATGTTTTCAGGGGGTCTTGGATGCCCAGAGgtctgttttcgattttggttattagaaaagaaatactagttctcgtaaactttggtgcacttgagttgtttatttgcatttttggttatgaagaaagtgt...
species | Glycine max |
transcript | GLYMA14G14000.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGGAGTAAATTGAAGAGAAATGTTTTCAGGGGGTCTTGGATGCCCAGAG GTGATGCCTTGAAAAAACTTGAAGAAAGAGGAGTGGTCATACGTTTTGTTAEST: gi|120533853|gb|EH261986.1|EH261986
genomic: TGGGAGTAAATTGAAGAGAAATGTTTTCAGGGGGTCTTGGATGCCCAGAGgtctgttttc ... tttctggcagGTGATGCCTTGAAAAAACTTGAAGAAAGAGGAGTGGTCATACGTTTTGTTA
EST: TGGGAGTAAATTGAAGAGAAATGTTTTCAGGGGGTCTTGGATGCCCAGAG GTGATGCCTTGAAAAAACTTGAAGAAAGAGGAGTGGTCATACGTTTTGTTAEST: gi|26056275|gb|CA799189.1|CA799189
genomic: TGGGAGTAAATTGAAGAGAAATGTTTTCAGGGGGTCTTGGATGCCCAGAGgtctgttttc ... tttctggcagGTGATGCCTTGAAAAAACTTGAAGAAAGAGGAGTGGTCATACGTTTTGTTA
EST: TGGGAGTAAATTGAAGAGAAATGTTTTCAGGGGGTCTTGGATGCCCAGAG GTGATGCCTTGAAAAAACTTGAAGAAAGAGGAGTGGTCATACGTTTTGTTA
genomic: TGGGAGTAAATTGAAGAGAAATGTTTTCAGGGGGTCTTGGATGCCCAGAGgtctgttttc ... tttctggcagGTGATGCCTTGAAAAAACTTGAAGAAAGAGGAGTGGTCATACGTTTTGTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTCTTCTGATCGTAGGCTTCTTGCTGTTATCGGAGTGTATACTGGATTTGGGAGTAAATTGAAGAGAAATGTTTTCAGGGGGTCTTGGATGCCCAGAGgtctgttttcgattttggttattagaaaagaaatactagttctcgtaaactttggtgcacttgagttgtttatttgcatttttggttatgaagaaagtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaaa