Sequence
atgc intronic sequence ATGC exonic sequenceGGAAATCTTGCGCAAGAGAAGAGCTGGGAAACTTCCTGGTGACACAACTTCTGTTCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACCgtaagtttgataaataagaactcaataagtacatttttacatcaagctttttgggaaaaagcttttaaacatataggccaagtttggattaatatttagt...
Basic information
species | Glycine max |
transcript | GLYMA14G13750.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G13750.2 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os02g08544.2 (Oryza sativa), 5'ss of exon 4
GGAAATCTTGCGCAAGAGAAGAGCTGGGAAACTTCCTGGTGACACAACTTCTGTTCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACCgtaagtttgataaataag--aactcaataagtacatttttacatcaagctttttgggaaaaagcttttaaacatataggc-caagtttggattaatatttagt
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AGAGATCCTTCGCAAGCGGAGAGCTGGTAAACTTCCTGGTGATACTGCATCTATACTAAAAGCTTGGTGGCAAGCTCATTCTAAGTGGCCATACCCAACTgtacgtggcaccaacattccatttccgtaactttattattatggtatcaattgtgggtcatgacgagcaattctttctacacatattcag-------------
upper sequence: GLYMA14G13750.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G370332_T01 (Zea mays), 5'ss of exon 4
GGAAATCTTGCGCAAGAGAAGAGCTGGGAAACTTCCTGGTGACACAACTTCTGTTCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACCgtaagtttgataaataagaactcaataagtacatttttacatcaagctttttgggaaaaagcttttaaacata--taggccaagtttggattaat-atttagt
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AGAGATTATGCGCAAGCGCAGAGCTGGGAAACTTCCTGGAGATACTGCATCTGTGCTGAAAGCTTGGTGGCAAGCTCATTCCAAGTGGCCATACCCAACTgtatgt------gacactacggcgacatata-attccctcgtcaactttt---gctatcagcttgggttcattgctgatccactctttgcttattcatccag-
upper sequence: GLYMA14G13750.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G433591_T02 (Zea mays), 5'ss of exon 5
GGAAATCTTGCGCAAGAGAAGAGCTGGGAAACTTCCTGGTGACACAACTTCTGTTCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACCgtaagtttgataaataagaactcaataagtacatttttacatcaagctttttgggaaaaagcttttaaacatataggccaagtttggattaat-atttagt
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AGAGATCATGCGCAAACGCAGGGCTGGGAAGCTTCCTGGAGATACCGCATCTGTACTGAAAGCTTGGTGGCAAGCTCATTCCAAGTGGCCGTACCCAACTgtacgt---------gacaccgcgtcaacttaattccctcgttagcttctgctatcaggttcggctcattg-atgagcaactctttgcttactcgtccag-
upper sequence: GLYMA14G13750.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G055243_T01 (Zea mays), 5'ss of exon 4
GGAAATCTTGCGCAAGAGAAGAGCTGGGAAACTTCCTGGTGACACAACTTCTGTTCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACCgtaagtttgataaataagaactcaataagtacatttttacatcaagctttttgggaaaaagctttta-----aacatataggccaagtt-----tgg----attaatatttagt--------------------------------
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AGAGATATTGCGGAAGCGAAGAGCTGGGAAACTCCCTGGCGACACTGCTTCTACCTTAAAAGCATGGTGGCAGGCTCATTCTAAGTGGCCGTACCCAACCgtaagtg-aacacatt-gatcctatcactcccagcaccattcctagttactcatgagcatattattacgttgaacacatggatcctatcactcccagcaccattcctatttactcatgagtatattatcgtggaccacttgtttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7235125|gb|AW570384.1|AW570384EST: CTGTTCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACC GAGGAGGATAAGGCAAGGTTGGTGCAGGAAACTGGATTG
genomic: CTGTTCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACCgtaagtttga ... ttcttgtcagGAGGAGGATAAGGCAAGGTTGGTGCAGGAAACTGGATTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAAATCTTGCGCAAGAGAAGAGCTGGGAAACTTCCTGGTGACACAACTTCTGTTCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACCgtaagtttgataaataagaactcaataagtacatttttacatcaagctttttgggaaaaagcttttaaacatataggccaagtttggattaatatttagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG