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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAAATAAATCCAAAAAATGCGATAAATGAGCACTTCTTGCCATGCTTCCTAGACTTCATTGTGTGGGGCCATGAGCATGAATGTTTGGTTGACCCGCAGgtgtgctaattatacttgtcttaaatgggctcagattgacatatgttgtgttctgcaaaagtaatatgtattttaattttctccag

Basic information

species Glycine max
transcript GLYMA14G12420.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G12420.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G106056_T01 (Zea mays), 5'ss of exon 10
---TAAAATAAATCCAAAAAATGCGATAAATGAGCACTTCTTGCCATGCTTCCTAGACTTCATTGTGTGGGGCCATGAGCATGAATGTTTGGTTGACCCGCAGgtgtgctaattatacttg-tcttaaatgggctcagattgacatatgttgtgttctgcaaaagtaatatgtattttaattttctccag
    || | ||| || |||| ||| || |||||||| ||||| ||| | ||||| || || ||||| ||||||||||||||||||||| |  |||| || |||||       | ||| ||  | ||   |       || | |                                               
GATAAAGACAAACCCTAAAAGTGCCATCAATGAGCATTTCTTAccacgtttcctggattttattgtatggggccatgagcatgaatgtcttattgatcctcaggtaacagcttgatatttccttttttgttattaaggactaa-----------------------------------------------

upper sequence: GLYMA14G12420.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G106056_T03 (Zea mays), 5'ss of exon 9
TAAAATAAATCCAAAAAATGCGATAAATGAGCACTTCTTGCCATGCTTCCTAGACTTCATTGTGTGGGGCCATGAGCATGAATGTTTGGTTGACCCGCAGgtg------tgctaattatacttgtcttaaatgggctcagattgacata-----------tgttgtgttctgcaaaagtaatatgtattttaattttctccag-----------------
 || | ||| || |||| ||| || |||||||| ||||| ||| | ||||| || || ||||| ||||||||||||||||||||| |  |||| || |||||       || || ||    || | |||    ||   | || |   |            || | |||| |  |  |  || |    |  |   ||  | |                   
AAAGACAAACCCTAAAAGTGCCATCAATGAGCATTTCTTACCACGTTTCCTGGATTTTATTGTATGGGGCCATGAGCATGAATGTCTTATTGATCCTCAGgtaacagcttgatatttccttttttgttattaaggactaaatggctttgctgagttgttgtgatatgtttttaaggaaaaaaactggtcatgcattcatacgtatatatactatctacag

upper sequence: GLYMA14G12420.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G54260.1 (Arabidopsis thaliana), 5'ss of exon 9
TAAAATAAATCCAAAAAATGCGATAAATGAGCACTTCTTGCCATGCTTCCTAGACTTCATTGTGTGGGGCCATGAGCATGAATGTTTGGTTGACCCGCAGgtgtgctaa-----ttatacttgtcttaaatgggctcagat-----tgacatatgttgtgttctgcaaaagtaatatgta---ttttaattttctccag
 |||  ||| || |||||||| |||| |||||||||  | ||| | ||||| ||||||||||||||||||||||||||||||||  |  | ||||| |||||     ||     | ||  |||   | | ||   | | ||     |||   |   |||    |||     | |  |  |   | ||||  || |  ||
GAAATCAAACCCCAAAAATGCAATAAGTGAGCACTTTCTTCCACGTTTCCTCGACTTCATTGTGTGGGGCCATGAGCATGAATGCCTAATCGACCCCCAGgtccatgaaaaatttgatttttggagttattgcatttaaataagagtgagccacaatgttacttgcctctttgagctaaaagctattaaacttttgaag

upper sequence: GLYMA14G12420.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv19s0014g03680.t01 (Vitis vinifera), 5'ss of exon 8
TAAAATAAATCCAAAAAATGCGATAAATGAGCACTTCTTGCCATGCTTCCTAGACTTCATTGTGTGGGGCCATGAGCATGAATGTTTGGTTGACCCGCAGgtg-tgctaattatacttgtcttaaatgggctcagattgacatatgttgtgttctgcaaaagtaatatgt---attttaattttctccag----
 || | |||||| |||||||| || | |||||| || || ||| | |||||||||||||| |||||||| ||||| ||||||||| | ||||| || ||||||   | ||  ||| || | |    |   ||   | |  |||   ||   || ||| | ||||     |   |  |   ||| ||        
AAAGACAAATCCTAAAAATGCAATCAGTGAGCATTTTTTACCAAGGTTCCTAGACTTCATAGTGTGGGGGCATGAACATGAATGTCTTGTTGATCCTCAGgtggcaccaa--atatttatttgtttttttctataact--catgactttacttttgctacagtatctcattggaggtcgttttgctttgaacag