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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGTGTGCAATTTGCAGGGAGAACTTGGTTTTAAATGACAAAATGCAAGAGTTGCCATGCAAGCACACATTCCACCCACCATGTCTAAAGCCATGGCTGgtattgtccctaactccacagatctattggaaattttatgttcttcttttgaaatcaacttcatgcattttattctatggaattcttgaagaaatgacatgattagatataagatgtgttcagttttatcctttatgtggcag

Basic information

species Glycine max
transcript GLYMA14G12380.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G12380.2 (Glycine max), 5'ss of exon 4
lower sequence: AT5G20910.1 (Arabidopsis thaliana), 5'ss of exon 4
AGAGTGTGCAATTTGCAGGGAGAACTTGGTTTTAAATGACAAAATGCAAGAGTTGCCATGCAAGCACACATTCCACCCACCATGTCTAAAGCCATGGCTGgtattgtccctaactccacagatctattggaaattttatgttcttcttttgaaatcaacttcatgc--attttattctatggaattcttgaagaaatgacatgattagatataagatgtgttcagttttatcctttatgtggcag
||| |||   || |||| ||||||  | ||| |    ||||| ||||| || |||||||||||||||||||| ||||| || || |||||||| ||||||||||       ||   | ||  ||| |    ||  |||        |    | || ||  | ||||  || || || ||||| |                                                             
AGAATGTTGCATCTGCAAGGAGAATCTAGTTATTGGCGACAAGATGCAGGAATTGCCATGCAAGCACACATTTCACCCTCCTTGCCTAAAGCCTTGGCTGgtataaaaaaaaaaatcccat-tctttc---aagcttactagtaagtaagaacataaagcttatgctcatattgttttatggcag------------------------------------------------------------

upper sequence: GLYMA14G12380.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv04s0008g02290.t01 (Vitis vinifera), 5'ss of exon 4
AGAGTGTGCAATTTGCAGGGAGAACTTGGTTTTAAATGACAAAATGCAAGAGTTGCCATGCAAGCACACATTCCACCCACCATGTCTAAAGCCATGGCTGgtattgtccctaactccacagatctattggaaattttatgttcttcttttgaaatcaacttcatgcattttattctatggaattcttgaagaaatgacatgattagatataagatgtgttcagttttatcctttatgtggcag
||| ||||| ||||||| ||||||||| ||| || |||||||||||||||||||||| |||||||||||||| ||||| || ||| ||||||| ||||||||| ||| ||| |  |     ||  ||   ||  ||   |       |  ||  ||  ||| |||| ||  | |   ||  |||  |  | || |    |   | | |    ||  | |||  |||                 
AGAATGTGCTATTTGCAAGGAGAACTTCGTTGTAGATGACAAAATGCAAGAGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTGgtaatgtacctcatcctt---attcatcataatattagagaagaaactcagagctcctctt-atgc-ttccact---tgccatttgtctaaaatttggctttctcgttcctggacat-ttcgctttggcag------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20498860|gb|BQ273790.1|BQ273790
EST:     AGTTGCCATGCAAGCACACATTCCACCCACCATGTCTAAAGCCATGGCTG                         GATGAGCACAATTCTTGTCCCATCTGTCGGCATGAGCTGCAAACTGATGAT
genomic: AGTTGCCATGCAAGCACACATTCCACCCACCATGTCTAAAGCCATGGCTGgtattgtccc ... tatgtggcagGATGAGCACAATTCTTGTCCCATCTGTCGGCATGAGCTGCAAACTGATGAT
EST: gi|31465459|gb|CD407487.1|CD407487
EST:     AGTTGCCATGCAAGCACACATTCCACCCACCATGTCTAAAGCCATGGCTG                         GATGAGCACAATTCTTGTCCCATCTGTCGGCATGAGCTGCAAACTGATGAT
genomic: AGTTGCCATGCAAGCACACATTCCACCCACCATGTCTAAAGCCATGGCTGgtattgtccc ... tatgtggcagGATGAGCACAATTCTTGTCCCATCTGTCGGCATGAGCTGCAAACTGATGAT
EST: gi|192320474|gb|FK012332.1|FK012332
EST:     AGTTGCCATGCAAGCACACATTCCACCCACCATGTCTAAAGCCATGGCTG                         GATGAGCACAATTCTTGTCCCATCTGTCGGCATGAGCTGCAAACTGATGAT
genomic: AGTTGCCATGCAAGCACACATTCCACCCACCATGTCTAAAGCCATGGCTGgtattgtccc ... tatgtggcagGATGAGCACAATTCTTGTCCCATCTGTCGGCATGAGCTGCAAACTGATGAT
EST: gi|193510240|gb|FK467578.1|FK467578
EST:     ACCCACCATGTCTAAAGCCTATTGGCTG                         GATGAGCACAATTCTTGTCCCATCTGTCGGCATGAGCTGCAAACTGATGA
genomic: ACCCACCATGTCTAAAGCC-A-TGGCTGgtattgtccc ... tatgtggcagGATGAGCACAATTCTTGTCCCATCTGTCGGCATGAGCTGCAAACTGATGA
EST: gi|22927277|gb|BU544416.1|BU544416
EST:     AGTTGCCATGCAAGCACACATTCCACCCACCATGTCTAAAGCCATGGCTG                         GATGAGCACAATTCTTGTCCCATCTGTCGGCATGAGCTGCAAACTGATGAT
genomic: AGTTGCCATGCAAGCACACATTCCACCCACCATGTCTAAAGCCATGGCTGgtattgtccc ... tatgtggcagGATGAGCACAATTCTTGTCCCATCTGTCGGCATGAGCTGCAAACTGATGAT
EST: gi|58018057|gb|CX704799.1|CX704799
EST:     AGTTGCCATGCAAGCACACATTCCACCCACCATGTCTAAAGCCATGGCTG                         GATGAGCACAATTCTTGTCCCATCTGTCGGCATGAGCTGCAAACTGATGAT
genomic: AGTTGCCATGCAAGCACACATTCCACCCACCATGTCTAAAGCCATGGCTGgtattgtccc ... tatgtggcagGATGAGCACAATTCTTGTCCCATCTGTCGGCATGAGCTGCAAACTGATGAT
EST: gi|31466528|gb|CD408556.1|CD408556
EST:     AGTTGCCATGCAAGCACACATTCCACCCACCATGTCTAAAGCCATGGCTG                         GATGAGCACCATTCTTGTCCCATCTGTCGGCATGAGCTGCAAACTGATGAT
genomic: AGTTGCCATGCAAGCACACATTCCACCCACCATGTCTAAAGCCATGGCTGgtattgtccc ... tatgtggcagGATGAGCACAATTCTTGTCCCATCTGTCGGCATGAGCTGCAAACTGATGAT
EST: gi|208258702|gb|GE057081.1|GE057081
EST:     TTCCACCCACCATGTCTAAAGCCATGGCTG                         GATGAGCACAATTCTTGTCCCATCTGTCGGCATGAGCCGCAAACTGATGAT
genomic: TTCCACCCACCATGTCTAAAGCCATGGCTGgtattgtccc ... tatgtggcagGATGAGCACAATTCTTGTCCCATCTGTCGGCATGAGCTGCAAACTGATGAT
EST: gi|6913301|gb|AW394831.1|AW394831
EST:     AGTTGCCATGCAAGCACACATTCCACCCACCATGTCTAAAGCCATGGCTG                         GATGAGCACAATTCTTGTCCCATCTGTCGGCATGAGCTGCAAACTGATGAT
genomic: AGTTGCCATGCAAGCACACATTCCACCCACCATGTCTAAAGCCATGGCTGgtattgtccc ... tatgtggcagGATGAGCACAATTCTTGTCCCATCTGTCGGCATGAGCTGCAAACTGATGAT