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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTTGATGATTGCATCCATTCCAAATATTATTGGTTGGCTGGCTATCTCATTTGCAAAAgtaagtttgaatgattttagtattttattttcctccattcatttacccaaaattacattaattggtatttcaatgtggttctggataatttattgtttatccaaacatgcaattatttagtaaatatatttggtcgtgattctgagcttgtcttattgacatgttcttcaattttcag

Basic information

species Glycine max
transcript GLYMA14G08070.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G08070.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os05g49270.1 (Oryza sativa), 5'ss of exon 3
TCTTTGATGATTGCATCCATTCCAAATATTATTGGTTGGCTGGCTATCTCATTTGCAAAAgtaagt--ttgaatgattttagtattttattttcctccattcatttaccca---aaattacattaattggtatttcaatgtggttctggataatttattgtttatccaaacatgcaattatttagtaaatatatttggtcgtgattctgagcttgtcttattgacatgttcttcaattttcag
|| |||||||||||  | |||||||| || ||||||||||| || ||||| |||||||||||| |   ||  ||| ||  || || ||| ||||  |   |  ||     |   || |||   |   ||   || |  | | |                                                                                                    
TCATTGATGATTGCTGCAATTCCAAACATCATTGGTTGGCTTGCCATCTCCTTTGCAAAAgtatggcattacatggttc-agaatcttactttcaccaccttgttgctttatacaatttaagctcgatgcctttgctttatag----------------------------------------------------------------------------------------------------

upper sequence: GLYMA14G08070.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G160460_T02 (Zea mays), 5'ss of exon 3
TCTTTGATGATTGCATCCATTCCAAATATTATTGGTTGGCTGGCTATCTCATTTGCAAAAgtaagtttgaatgattttagtattttattttcctccattcatttacccaaaattacattaattggtatttcaatgtggttctggataatttattgtttatccaaacatgcaattatttagtaaatatatttggtcgtgattctgagcttgtcttattgacatgttcttcaattttcag
|| |||||||||||| | ||||||||  | ||||||||||| || ||||| |||||||||||| | |   |||  |||  | ||||||||      |||  || ||   |  |  ||  ||| ||    |  |||    | ||    || | || |  |                                                                               
TCGTTGATGATTGCAGCAATTCCAAACGTCATTGGTTGGCTTGCGATCTCCTTTGCAAAAgtatggtactatgtgtttctttttttatttcaacatattgcttgac---aggtgtcaacaataggc---ttgatgactgtttgac--atctgttttgcag------------------------------------------------------------------------------

upper sequence: GLYMA14G08070.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G097768_T02 (Zea mays), 5'ss of exon 4
TCTTTGATGATTGCATCCATTCCAAATATTATTGGTTGGCTGGCTATCTCATTTGCAAAAgtaagtttgaatgattttagtattttat-tttcctccattcatttacccaaaattacattaattggtatttcaatgtggttctggataatttattgtttatccaaacatgcaattatttagtaaatatatttggtcgtgattctgagcttgtcttattgacatgttcttcaattttcag
||| | ||||| ||  | |||||||| || ||||| ||||| || || |||||||||||||||||||  | |    |   | ||  ||  |||  |   | |||| |         || ||  || || |    ||||  | |      ||| ||  || |       ||||  |||| ||                                                          
TCTCTCATGATCGCTGCGATTCCAAACATAATTGGGTGGCTCGCGATATCATTTGCAAAAgtaagttcaactaccatcctttttccatgcttctgctgctgatttcctttgttcgtcaatatatgataataacctgtgagtgtt-----ttttttacttctgttgcggtgca--tattcag----------------------------------------------------------