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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGGTTTATCTGATCAGATAAGGGAATTGAGGGAATCAATTGAATTACCTCTGATGAATCCTGAGCTCTTCATTCGAGTTGGAATTAAACCTCCTAAGgtgattacttttcactgtactacttggtctttggcctctattgtatttgttttggcagcattgtcacctaagtatccacaatttcttttggtggatgtgtgtttagaggagccatggtttatagttttgtatctgatcgatttcttctcaattcttgtctcccag

Basic information

species Glycine max
transcript GLYMA14G07750.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G07750.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g13090.t01 (Vitis vinifera), 5'ss of exon 4
TGGTGGTTTATCTGATCAGATAAGGGAATTGAGGGAATCAATTGAATTACCTCTGATGAATCCTGAGCTCTTCATTCGAGTTGGAATTAAACCTCCTAAGgtgattacttttcactgtactacttggtctttggcctctattgtatttgttttggcagcattgtcacctaagt-atccacaatttcttttggtggatgtgtgtttagaggagccatggtttatagttttgtatctgatcgatttcttctcaattcttgtctcccag
 ||||| ||||| ||||| ||  | ||| | ||||||||||||||  ||||||| ||||||||||| |||||  || ||||||||||||||||||| |||||||||  |    ||| ||  | ||| |  ||   || ||| ||   |||| ||    ||||||||  | ||| | |||    | ||  ||||||     ||  | ||       |  ||| |  ||   ||  | |    | ||||     || || | |  |||
GGGTGGGTTATCAGATCAAATCCGAGAACTCAGGGAATCAATTGAGCTACCTCTAATGAATCCTGAACTCTTTCTTAGAGTTGGAATTAAACCTCCCAAGgtgattcat----acttta--atttgttagttattctgtatggt--ctgttctg----cattgtcaattgagttagcca----tcctagtggtggtaacatgaatgga-----ttttattttt--ttccttaattaaaaagtctcttaaattttatttttttgcag

upper sequence: GLYMA14G07750.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S13_419V6.1 (Physcomitrella patens), 5'ss of exon 4
TGGTGGTTTATCTGATCAGATAAGGGAATTGAGGGAATCAATTGAATTACCTCTGATGAATCCTGAGCTCTTCATTCGAGTTGGAATTAAACCTCCTAAGgtgattacttttcactgtactacttggtctttggcctctattgtatttgttttggcagcattgtcacctaagtatccacaatttcttttggtggatgtgtgtttagaggagccatggtttatagttttgtatctgatcgatttcttctcaattcttgtctcccag
||| ||  ||  ||| || ||  | ||| |  | || |||||||| || || || ||||| |||||||||||| |||||||||| ||||| ||||| |||||   || |   |  |||  ||||   ||  ||   |  |||       |    |   ||| |   | |  ||  |   |  | ||     |   |   ||                                                                
TGGAGGACTAAGTGACCAAATTCGAGAACTTCGTGAGTCAATTGAGTTGCCGCTTATGAACCCTGAGCTCTTCCTTCGAGTTGGCATTAAGCCTCCAAAGgtacctattggcctgtgttttactacctcgctgattttgatttagcaactgccagtgacat-gcatcttttgtgacgttacgtcctacccttatttccatg----------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16278601|gb|BI942988.1|BI942988
EST:     CTCTGATGAATCCTGAGCTCTTCATTCGAGTTGGAATTAAACCTCCTAAG                         GGTGTTCTCCTTTATGGGCCTCCTGGTACTGGTAAAACATTGTTAGCTAGG
genomic: CTCTGATGAATCCTGAGCTCTTCATTCGAGTTGGAATTAAACCTCCTAAGgtgattactt ... tgtctcccagGGTGTTCTCCTTTATGGGCCTCCTGGTACTGGTAAAACATTGTTAGCTAGG
EST: gi|24205453|gb|BU964706.1|BU964706
EST:     AACCTCCTAAG                         GGTGTTCTCCTTTATGGGCCTCCTGGTACTGGTAAAACATTGTTAGCTAGG
genomic: AACCTCCTAAGgtgattactt ... tgtctcccagGGTGTTCTCCTTTATGGGCCTCCTGGTACTGGTAAAACATTGTTAGCTAGG
EST: gi|57574105|gb|CX547080.1|CX547080
EST:     CTCTGATGATTCCTGAGCTCTTCATTCGAG-TGGAATTAAACCTCCTAAG                         GGTGTTCTCCTTTATGGGCCTCCTGGTACT-GTAAAAACATTGTTAGCTAG
genomic: CTCTGATGAATCCTGAGCTCTTCATTCGAGTTGGAATTAAACCTCCTAAGgtgattactt ... tgtctcccagGGTGTTCTCCTTTATGGGCCTCCTGGTACTGGT-AAAACATTGTTAGCTAG
EST: gi|193372457|gb|FK337410.1|FK337410
EST:     CTCTGATGAATCCTGAGCTCTTCATTCGAGTTGGAATTAAACCTCCTAAG                         GGTGTTCTCCTTTATGGGCCTCCTGGTACTGGTAAAACATTGTTAGCTAGG
genomic: CTCTGATGAATCCTGAGCTCTTCATTCGAGTTGGAATTAAACCTCCTAAGgtgattactt ... tgtctcccagGGTGTTCTCCTTTATGGGCCTCCTGGTACTGGTAAAACATTGTTAGCTAGG